Hb_021420_010

Information

Type -
Description -
Location Contig21420: 3-419
Sequence    

Annotation

kegg
ID cic:CICLE_v10029508mg
description hypothetical protein
nr
ID XP_006422982.1
description hypothetical protein CICLE_v10029508mg [Citrus clementina]
swissprot
ID P16149
description 40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1
trembl
ID A0A067CYW4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032049mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021420_010 0.0 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
2 Hb_000415_060 0.187922881 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
3 Hb_029921_020 0.197883404 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
4 Hb_000453_150 0.1985921952 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_003388_100 0.2028561431 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
6 Hb_000062_060 0.2040997266 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
7 Hb_000193_150 0.2066779238 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
8 Hb_004361_050 0.2086320445 - - ring finger containing protein, putative [Ricinus communis]
9 Hb_005754_010 0.2102835808 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
10 Hb_001606_080 0.21093473 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
11 Hb_005976_050 0.2113017096 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
12 Hb_034506_010 0.2124247432 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
13 Hb_000742_210 0.2131268503 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_096346_010 0.2141318833 - - unnamed protein product [Coffea canephora]
15 Hb_000733_050 0.2144660934 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
16 Hb_001484_120 0.2171258061 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
17 Hb_135377_010 0.2173474147 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
18 Hb_152079_010 0.2178557663 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
19 Hb_103760_010 0.2186130243 - - serine/arginine rich splicing factor, putative [Ricinus communis]
20 Hb_000367_010 0.2205222737 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]

Gene co-expression network

sample Hb_021420_010 Hb_021420_010 Hb_000415_060 Hb_000415_060 Hb_021420_010--Hb_000415_060 Hb_029921_020 Hb_029921_020 Hb_021420_010--Hb_029921_020 Hb_000453_150 Hb_000453_150 Hb_021420_010--Hb_000453_150 Hb_003388_100 Hb_003388_100 Hb_021420_010--Hb_003388_100 Hb_000062_060 Hb_000062_060 Hb_021420_010--Hb_000062_060 Hb_000193_150 Hb_000193_150 Hb_021420_010--Hb_000193_150 Hb_000028_160 Hb_000028_160 Hb_000415_060--Hb_000028_160 Hb_152079_010 Hb_152079_010 Hb_000415_060--Hb_152079_010 Hb_000347_500 Hb_000347_500 Hb_000415_060--Hb_000347_500 Hb_011030_010 Hb_011030_010 Hb_000415_060--Hb_011030_010 Hb_046931_010 Hb_046931_010 Hb_000415_060--Hb_046931_010 Hb_026206_020 Hb_026206_020 Hb_029921_020--Hb_026206_020 Hb_007810_100 Hb_007810_100 Hb_029921_020--Hb_007810_100 Hb_000179_200 Hb_000179_200 Hb_029921_020--Hb_000179_200 Hb_000566_100 Hb_000566_100 Hb_029921_020--Hb_000566_100 Hb_000100_130 Hb_000100_130 Hb_029921_020--Hb_000100_130 Hb_077048_010 Hb_077048_010 Hb_000453_150--Hb_077048_010 Hb_000537_140 Hb_000537_140 Hb_000453_150--Hb_000537_140 Hb_000157_200 Hb_000157_200 Hb_000453_150--Hb_000157_200 Hb_009367_080 Hb_009367_080 Hb_000453_150--Hb_009367_080 Hb_000322_180 Hb_000322_180 Hb_000453_150--Hb_000322_180 Hb_005260_040 Hb_005260_040 Hb_000453_150--Hb_005260_040 Hb_000158_130 Hb_000158_130 Hb_003388_100--Hb_000158_130 Hb_003388_100--Hb_005260_040 Hb_015099_010 Hb_015099_010 Hb_003388_100--Hb_015099_010 Hb_000261_290 Hb_000261_290 Hb_003388_100--Hb_000261_290 Hb_000375_130 Hb_000375_130 Hb_003388_100--Hb_000375_130 Hb_003097_180 Hb_003097_180 Hb_003388_100--Hb_003097_180 Hb_037793_010 Hb_037793_010 Hb_000062_060--Hb_037793_010 Hb_005144_030 Hb_005144_030 Hb_000062_060--Hb_005144_030 Hb_000136_190 Hb_000136_190 Hb_000062_060--Hb_000136_190 Hb_011206_010 Hb_011206_010 Hb_000062_060--Hb_011206_010 Hb_001508_020 Hb_001508_020 Hb_000062_060--Hb_001508_020 Hb_002815_060 Hb_002815_060 Hb_000062_060--Hb_002815_060 Hb_000742_210 Hb_000742_210 Hb_000193_150--Hb_000742_210 Hb_002157_190 Hb_002157_190 Hb_000193_150--Hb_002157_190 Hb_035318_010 Hb_035318_010 Hb_000193_150--Hb_035318_010 Hb_000193_150--Hb_000028_160 Hb_003064_030 Hb_003064_030 Hb_000193_150--Hb_003064_030 Hb_087762_010 Hb_087762_010 Hb_000193_150--Hb_087762_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66348 0.848563 1.72217 1.52943 0.913319 3.93588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184208 1.0128 1.17237 2.27668 0.51554

CAGE analysis