Hb_000193_150

Information

Type transcription factor
Description TF Family: NAC
Location Contig193: 120431-122516
Sequence    

Annotation

kegg
ID tcc:TCM_014073
description NAC domain protein, IPR003441
nr
ID XP_012080293.1
description PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID R4N7I9
description NAC transcription factor 002 OS=Jatropha curcas GN=JCGZ_11649 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19236: 120562-122516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_150 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
2 Hb_000742_210 0.1429281397 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_002157_190 0.1455354344 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
4 Hb_035318_010 0.1651792103 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
5 Hb_000028_160 0.1688808589 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
6 Hb_003064_030 0.178101934 - - bromodomain-containing protein, putative [Ricinus communis]
7 Hb_087762_010 0.1798393274 - - thioredoxin-like family protein [Hevea brasiliensis]
8 Hb_003297_010 0.1841981673 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
9 Hb_000120_510 0.1845490983 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
10 Hb_002783_010 0.1900457288 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
11 Hb_001575_040 0.1921720677 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
12 Hb_000787_170 0.1948038152 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
13 Hb_121729_020 0.1957434317 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000441_160 0.1973698912 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_004361_050 0.1984998717 - - ring finger containing protein, putative [Ricinus communis]
16 Hb_170487_010 0.1987404253 - - -
17 Hb_001105_010 0.1994701677 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
18 Hb_005846_020 0.1999889416 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
19 Hb_009620_030 0.2060616202 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
20 Hb_024990_010 0.2062984893 - - PREDICTED: la protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_150 Hb_000193_150 Hb_000742_210 Hb_000742_210 Hb_000193_150--Hb_000742_210 Hb_002157_190 Hb_002157_190 Hb_000193_150--Hb_002157_190 Hb_035318_010 Hb_035318_010 Hb_000193_150--Hb_035318_010 Hb_000028_160 Hb_000028_160 Hb_000193_150--Hb_000028_160 Hb_003064_030 Hb_003064_030 Hb_000193_150--Hb_003064_030 Hb_087762_010 Hb_087762_010 Hb_000193_150--Hb_087762_010 Hb_000787_170 Hb_000787_170 Hb_000742_210--Hb_000787_170 Hb_000939_060 Hb_000939_060 Hb_000742_210--Hb_000939_060 Hb_001105_010 Hb_001105_010 Hb_000742_210--Hb_001105_010 Hb_080147_040 Hb_080147_040 Hb_000742_210--Hb_080147_040 Hb_009620_030 Hb_009620_030 Hb_000742_210--Hb_009620_030 Hb_046931_010 Hb_046931_010 Hb_000742_210--Hb_046931_010 Hb_009411_020 Hb_009411_020 Hb_002157_190--Hb_009411_020 Hb_000175_390 Hb_000175_390 Hb_002157_190--Hb_000175_390 Hb_001616_090 Hb_001616_090 Hb_002157_190--Hb_001616_090 Hb_012132_040 Hb_012132_040 Hb_002157_190--Hb_012132_040 Hb_000156_140 Hb_000156_140 Hb_002157_190--Hb_000156_140 Hb_000088_200 Hb_000088_200 Hb_002157_190--Hb_000088_200 Hb_001910_020 Hb_001910_020 Hb_035318_010--Hb_001910_020 Hb_035318_010--Hb_000787_170 Hb_001882_040 Hb_001882_040 Hb_035318_010--Hb_001882_040 Hb_152453_010 Hb_152453_010 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_035318_010--Hb_000939_060 Hb_000815_140 Hb_000815_140 Hb_000028_160--Hb_000815_140 Hb_010128_070 Hb_010128_070 Hb_000028_160--Hb_010128_070 Hb_000028_160--Hb_000742_210 Hb_000028_160--Hb_009620_030 Hb_000028_160--Hb_046931_010 Hb_000028_160--Hb_003064_030 Hb_003064_030--Hb_009620_030 Hb_003064_030--Hb_080147_040 Hb_003064_030--Hb_035318_010 Hb_121729_020 Hb_121729_020 Hb_003064_030--Hb_121729_020 Hb_003064_030--Hb_000787_170 Hb_003064_030--Hb_010128_070 Hb_000891_040 Hb_000891_040 Hb_087762_010--Hb_000891_040 Hb_003297_010 Hb_003297_010 Hb_087762_010--Hb_003297_010 Hb_155375_010 Hb_155375_010 Hb_087762_010--Hb_155375_010 Hb_087762_010--Hb_002157_190 Hb_002253_040 Hb_002253_040 Hb_087762_010--Hb_002253_040 Hb_007765_010 Hb_007765_010 Hb_087762_010--Hb_007765_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.4419 16.6274 21.7963 6.03722 15.2858 63.1982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.2572 12.3498 4.98263 12.3674 2.87866

CAGE analysis