Hb_026206_020

Information

Type transcription factor
Description TF Family: TRAF
Location Contig26206: 14415-18486
Sequence    

Annotation

kegg
ID rcu:RCOM_0549760
description protein binding protein, putative
nr
ID XP_012080692.1
description PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
swissprot
ID Q9SJ85
description BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2
trembl
ID A0A067KF19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13793 PE=4 SV=1
Gene Ontology
ID GO:0009954
description btb poz domain-containing protein at2g04740

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27411: 16029-16456 , PASA_asmbl_27412: 16516-18235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026206_020 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
2 Hb_006649_080 0.133008656 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
3 Hb_033187_050 0.1659642677 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
4 Hb_009620_030 0.1730881569 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
5 Hb_000479_150 0.1740187988 - - glycosyl transferase family 8 family protein [Populus trichocarpa]
6 Hb_011218_070 0.1754036671 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
7 Hb_008554_120 0.1772574216 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
8 Hb_000805_260 0.1776726792 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
9 Hb_080147_040 0.183440515 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
10 Hb_000270_560 0.1834419725 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
11 Hb_001606_080 0.1835551627 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
12 Hb_004097_120 0.1849419705 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_001160_120 0.1850968517 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002102_020 0.18766889 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
15 Hb_011030_010 0.1881163327 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
16 Hb_010128_070 0.1881946725 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_003929_140 0.1886368173 - - DNA binding protein, putative [Ricinus communis]
18 Hb_001900_120 0.1894828074 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
19 Hb_007229_040 0.1910190292 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
20 Hb_002035_090 0.1920434388 - - -

Gene co-expression network

sample Hb_026206_020 Hb_026206_020 Hb_006649_080 Hb_006649_080 Hb_026206_020--Hb_006649_080 Hb_033187_050 Hb_033187_050 Hb_026206_020--Hb_033187_050 Hb_009620_030 Hb_009620_030 Hb_026206_020--Hb_009620_030 Hb_000479_150 Hb_000479_150 Hb_026206_020--Hb_000479_150 Hb_011218_070 Hb_011218_070 Hb_026206_020--Hb_011218_070 Hb_008554_120 Hb_008554_120 Hb_026206_020--Hb_008554_120 Hb_000742_250 Hb_000742_250 Hb_006649_080--Hb_000742_250 Hb_185467_010 Hb_185467_010 Hb_006649_080--Hb_185467_010 Hb_033834_010 Hb_033834_010 Hb_006649_080--Hb_033834_010 Hb_000359_250 Hb_000359_250 Hb_006649_080--Hb_000359_250 Hb_003878_120 Hb_003878_120 Hb_006649_080--Hb_003878_120 Hb_004096_020 Hb_004096_020 Hb_006649_080--Hb_004096_020 Hb_000645_120 Hb_000645_120 Hb_033187_050--Hb_000645_120 Hb_011030_010 Hb_011030_010 Hb_033187_050--Hb_011030_010 Hb_147737_010 Hb_147737_010 Hb_033187_050--Hb_147737_010 Hb_003531_060 Hb_003531_060 Hb_033187_050--Hb_003531_060 Hb_000531_090 Hb_000531_090 Hb_033187_050--Hb_000531_090 Hb_009969_030 Hb_009969_030 Hb_033187_050--Hb_009969_030 Hb_080147_040 Hb_080147_040 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_030827_020 Hb_030827_020 Hb_000479_150--Hb_030827_020 Hb_004357_020 Hb_004357_020 Hb_000479_150--Hb_004357_020 Hb_000334_220 Hb_000334_220 Hb_000479_150--Hb_000334_220 Hb_002267_140 Hb_002267_140 Hb_000479_150--Hb_002267_140 Hb_138596_010 Hb_138596_010 Hb_000479_150--Hb_138596_010 Hb_002843_120 Hb_002843_120 Hb_000479_150--Hb_002843_120 Hb_001049_030 Hb_001049_030 Hb_011218_070--Hb_001049_030 Hb_000077_230 Hb_000077_230 Hb_011218_070--Hb_000077_230 Hb_003216_080 Hb_003216_080 Hb_011218_070--Hb_003216_080 Hb_000465_480 Hb_000465_480 Hb_011218_070--Hb_000465_480 Hb_001930_010 Hb_001930_010 Hb_011218_070--Hb_001930_010 Hb_000264_320 Hb_000264_320 Hb_011218_070--Hb_000264_320 Hb_002301_220 Hb_002301_220 Hb_008554_120--Hb_002301_220 Hb_102129_070 Hb_102129_070 Hb_008554_120--Hb_102129_070 Hb_007982_070 Hb_007982_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6621 8.54672 7.74538 3.02145 7.08829 10.3805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27707 1.71407 10.247 4.19744 2.94768

CAGE analysis