Hb_000157_200

Information

Type -
Description -
Location Contig157: 198778-201448
Sequence    

Annotation

kegg
ID egr:104425522
description putative disease resistance protein RGA4
nr
ID XP_010036528.1
description PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID F6HKZ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13690: 200311-201608 , PASA_asmbl_13691: 200338-201738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000157_200 0.0 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
2 Hb_003203_020 0.135668437 - - unknown [Lotus japonicus]
3 Hb_003430_060 0.1361724317 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
4 Hb_000336_270 0.1365499958 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_010697_040 0.1376577555 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
6 Hb_002081_120 0.1399634534 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
7 Hb_000046_070 0.1434695246 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_000453_100 0.1481955379 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
9 Hb_003411_110 0.148255164 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
10 Hb_008103_020 0.1483799023 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
11 Hb_000832_030 0.1495248342 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
12 Hb_000453_150 0.1499871161 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_028472_010 0.1500661716 - - glycosyltransferase, putative [Ricinus communis]
14 Hb_001147_110 0.1501823521 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
15 Hb_000359_270 0.1511218992 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_001269_210 0.1512429785 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
17 Hb_005321_020 0.1518488844 - - splicing factor-related family protein [Populus trichocarpa]
18 Hb_002000_060 0.1541200495 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
19 Hb_002046_020 0.1543829597 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
20 Hb_074969_010 0.1555702882 - - hypothetical protein JCGZ_23339 [Jatropha curcas]

Gene co-expression network

sample Hb_000157_200 Hb_000157_200 Hb_003203_020 Hb_003203_020 Hb_000157_200--Hb_003203_020 Hb_003430_060 Hb_003430_060 Hb_000157_200--Hb_003430_060 Hb_000336_270 Hb_000336_270 Hb_000157_200--Hb_000336_270 Hb_010697_040 Hb_010697_040 Hb_000157_200--Hb_010697_040 Hb_002081_120 Hb_002081_120 Hb_000157_200--Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_000157_200--Hb_000046_070 Hb_005288_200 Hb_005288_200 Hb_003203_020--Hb_005288_200 Hb_000453_100 Hb_000453_100 Hb_003203_020--Hb_000453_100 Hb_000011_190 Hb_000011_190 Hb_003203_020--Hb_000011_190 Hb_000086_580 Hb_000086_580 Hb_003203_020--Hb_000086_580 Hb_155396_010 Hb_155396_010 Hb_003203_020--Hb_155396_010 Hb_007508_080 Hb_007508_080 Hb_003430_060--Hb_007508_080 Hb_005321_020 Hb_005321_020 Hb_003430_060--Hb_005321_020 Hb_000574_100 Hb_000574_100 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_003430_060--Hb_010697_040 Hb_000563_640 Hb_000563_640 Hb_003430_060--Hb_000563_640 Hb_002000_060 Hb_002000_060 Hb_000336_270--Hb_002000_060 Hb_080147_040 Hb_080147_040 Hb_000336_270--Hb_080147_040 Hb_001882_040 Hb_001882_040 Hb_000336_270--Hb_001882_040 Hb_001163_120 Hb_001163_120 Hb_000336_270--Hb_001163_120 Hb_000563_600 Hb_000563_600 Hb_000336_270--Hb_000563_600 Hb_009780_100 Hb_009780_100 Hb_000336_270--Hb_009780_100 Hb_000139_130 Hb_000139_130 Hb_010697_040--Hb_000139_130 Hb_008253_020 Hb_008253_020 Hb_010697_040--Hb_008253_020 Hb_010697_040--Hb_007508_080 Hb_001205_110 Hb_001205_110 Hb_010697_040--Hb_001205_110 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_002081_120--Hb_000046_070 Hb_003470_030 Hb_003470_030 Hb_002081_120--Hb_003470_030 Hb_002666_080 Hb_002666_080 Hb_002081_120--Hb_002666_080 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_001033_050 Hb_001033_050 Hb_002081_120--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002081_120--Hb_002477_250 Hb_001147_110 Hb_001147_110 Hb_000046_070--Hb_001147_110 Hb_000879_160 Hb_000879_160 Hb_000046_070--Hb_000879_160 Hb_000046_070--Hb_001033_050 Hb_004668_060 Hb_004668_060 Hb_000046_070--Hb_004668_060 Hb_000780_170 Hb_000780_170 Hb_000046_070--Hb_000780_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3118 2.46233 0.83934 1.87109 0.80145 1.83251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.55592 0.568356 0.880672 1.09213 0.889424

CAGE analysis