Hb_003203_020

Information

Type -
Description -
Location Contig3203: 8884-10147
Sequence    

Annotation

kegg
ID pmum:103333604
description protein yippee-like At4g27745
nr
ID AFK42973.1
description unknown [Lotus japonicus]
swissprot
ID Q9T096
description Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2
trembl
ID I3SRT1
description Protein yippee-like OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33848: 9455-10128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003203_020 0.0 - - unknown [Lotus japonicus]
2 Hb_005288_200 0.1334014776 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000157_200 0.135668437 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
4 Hb_000453_100 0.1376131611 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
5 Hb_000011_190 0.1490595356 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
6 Hb_000086_580 0.1494717438 - - ring finger protein, putative [Ricinus communis]
7 Hb_155396_010 0.1507576527 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_006065_050 0.151987884 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
9 Hb_170487_020 0.1535895504 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
10 Hb_001055_030 0.1549476486 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
11 Hb_093084_070 0.1565165525 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
12 Hb_010697_040 0.1597044249 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
13 Hb_024879_010 0.1603723765 - - unknown [Glycine max]
14 Hb_155702_010 0.1618627198 - - Tetraspanin-5 [Gossypium arboreum]
15 Hb_000832_030 0.1619835035 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
16 Hb_028962_020 0.1620706664 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
17 Hb_000032_620 0.1621961839 - - hypothetical protein RCOM_1311830 [Ricinus communis]
18 Hb_003373_040 0.162476217 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
19 Hb_001481_160 0.1629137373 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
20 Hb_011173_040 0.1632116624 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Populus euphratica]

Gene co-expression network

sample Hb_003203_020 Hb_003203_020 Hb_005288_200 Hb_005288_200 Hb_003203_020--Hb_005288_200 Hb_000157_200 Hb_000157_200 Hb_003203_020--Hb_000157_200 Hb_000453_100 Hb_000453_100 Hb_003203_020--Hb_000453_100 Hb_000011_190 Hb_000011_190 Hb_003203_020--Hb_000011_190 Hb_000086_580 Hb_000086_580 Hb_003203_020--Hb_000086_580 Hb_155396_010 Hb_155396_010 Hb_003203_020--Hb_155396_010 Hb_005288_200--Hb_155396_010 Hb_155702_010 Hb_155702_010 Hb_005288_200--Hb_155702_010 Hb_000525_010 Hb_000525_010 Hb_005288_200--Hb_000525_010 Hb_005288_200--Hb_000011_190 Hb_000032_620 Hb_000032_620 Hb_005288_200--Hb_000032_620 Hb_003430_060 Hb_003430_060 Hb_000157_200--Hb_003430_060 Hb_000336_270 Hb_000336_270 Hb_000157_200--Hb_000336_270 Hb_010697_040 Hb_010697_040 Hb_000157_200--Hb_010697_040 Hb_002081_120 Hb_002081_120 Hb_000157_200--Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_000157_200--Hb_000046_070 Hb_000453_100--Hb_000011_190 Hb_001486_070 Hb_001486_070 Hb_000453_100--Hb_001486_070 Hb_008177_030 Hb_008177_030 Hb_000453_100--Hb_008177_030 Hb_000453_100--Hb_003430_060 Hb_078477_050 Hb_078477_050 Hb_000453_100--Hb_078477_050 Hb_005503_040 Hb_005503_040 Hb_000011_190--Hb_005503_040 Hb_004668_060 Hb_004668_060 Hb_000011_190--Hb_004668_060 Hb_000982_060 Hb_000982_060 Hb_000011_190--Hb_000982_060 Hb_007508_080 Hb_007508_080 Hb_000011_190--Hb_007508_080 Hb_001541_230 Hb_001541_230 Hb_000011_190--Hb_001541_230 Hb_005000_320 Hb_005000_320 Hb_000011_190--Hb_005000_320 Hb_065525_060 Hb_065525_060 Hb_000086_580--Hb_065525_060 Hb_093084_070 Hb_093084_070 Hb_000086_580--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_000086_580--Hb_000236_220 Hb_003373_040 Hb_003373_040 Hb_000086_580--Hb_003373_040 Hb_000363_130 Hb_000363_130 Hb_000086_580--Hb_000363_130 Hb_003777_160 Hb_003777_160 Hb_000086_580--Hb_003777_160 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.7635 41.615 9.59582 32.5354 16.8371 22.0282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0488 16.9025 9.22906 18.3738 6.08096

CAGE analysis