Hb_005288_200

Information

Type -
Description -
Location Contig5288: 124368-129119
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47209: 123844-125075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_200 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_155396_010 0.1181064338 - - TMV resistance protein N, putative [Ricinus communis]
3 Hb_155702_010 0.1295094914 - - Tetraspanin-5 [Gossypium arboreum]
4 Hb_003203_020 0.1334014776 - - unknown [Lotus japonicus]
5 Hb_000525_010 0.137991258 - - ring finger protein, putative [Ricinus communis]
6 Hb_000011_190 0.1383185892 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
7 Hb_000032_620 0.1408758995 - - hypothetical protein RCOM_1311830 [Ricinus communis]
8 Hb_002111_060 0.1458759327 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
9 Hb_000982_060 0.1460566087 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
10 Hb_003373_040 0.1478918151 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
11 Hb_004785_060 0.1486034703 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
12 Hb_000086_580 0.150344454 - - ring finger protein, putative [Ricinus communis]
13 Hb_003430_060 0.1506730285 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
14 Hb_000336_250 0.1507936796 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
15 Hb_004109_030 0.151472938 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000003_220 0.1516815043 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
17 Hb_001728_100 0.1526427527 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
18 Hb_005551_060 0.1534497096 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
19 Hb_001135_130 0.1538610592 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
20 Hb_000334_220 0.1552039136 - - hypothetical protein JCGZ_16772 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_200 Hb_005288_200 Hb_155396_010 Hb_155396_010 Hb_005288_200--Hb_155396_010 Hb_155702_010 Hb_155702_010 Hb_005288_200--Hb_155702_010 Hb_003203_020 Hb_003203_020 Hb_005288_200--Hb_003203_020 Hb_000525_010 Hb_000525_010 Hb_005288_200--Hb_000525_010 Hb_000011_190 Hb_000011_190 Hb_005288_200--Hb_000011_190 Hb_000032_620 Hb_000032_620 Hb_005288_200--Hb_000032_620 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_011465_030 Hb_011465_030 Hb_155702_010--Hb_011465_030 Hb_017075_030 Hb_017075_030 Hb_155702_010--Hb_017075_030 Hb_002002_030 Hb_002002_030 Hb_155702_010--Hb_002002_030 Hb_001769_010 Hb_001769_010 Hb_155702_010--Hb_001769_010 Hb_032202_240 Hb_032202_240 Hb_155702_010--Hb_032202_240 Hb_003106_150 Hb_003106_150 Hb_155702_010--Hb_003106_150 Hb_000157_200 Hb_000157_200 Hb_003203_020--Hb_000157_200 Hb_000453_100 Hb_000453_100 Hb_003203_020--Hb_000453_100 Hb_003203_020--Hb_000011_190 Hb_000086_580 Hb_000086_580 Hb_003203_020--Hb_000086_580 Hb_003203_020--Hb_155396_010 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000025_330 Hb_000025_330 Hb_000525_010--Hb_000025_330 Hb_001691_150 Hb_001691_150 Hb_000525_010--Hb_001691_150 Hb_000418_070 Hb_000418_070 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_005503_040 Hb_005503_040 Hb_000011_190--Hb_005503_040 Hb_004668_060 Hb_004668_060 Hb_000011_190--Hb_004668_060 Hb_000982_060 Hb_000982_060 Hb_000011_190--Hb_000982_060 Hb_007508_080 Hb_007508_080 Hb_000011_190--Hb_007508_080 Hb_001541_230 Hb_001541_230 Hb_000011_190--Hb_001541_230 Hb_005000_320 Hb_005000_320 Hb_000011_190--Hb_005000_320 Hb_086063_010 Hb_086063_010 Hb_000032_620--Hb_086063_010 Hb_000798_060 Hb_000798_060 Hb_000032_620--Hb_000798_060 Hb_001220_030 Hb_001220_030 Hb_000032_620--Hb_001220_030 Hb_001610_110 Hb_001610_110 Hb_000032_620--Hb_001610_110 Hb_005928_110 Hb_005928_110 Hb_000032_620--Hb_005928_110 Hb_164010_060 Hb_164010_060 Hb_000032_620--Hb_164010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.332 29.7322 5.9719 21.8786 15.3523 16.1192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6988 8.26943 18.2688 8.99604 3.24883

CAGE analysis