Hb_000525_010

Information

Type -
Description -
Location Contig525: 4365-6573
Sequence    

Annotation

kegg
ID rcu:RCOM_0851740
description ring finger protein, putative
nr
ID XP_002517366.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9FL07
description RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1
trembl
ID B9RUC1
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0851740 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ring-h2 finger protein atl46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46953: 4060-4413 , PASA_asmbl_46954: 4742-5022 , PASA_asmbl_46956: 5322-5445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_010 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_007850_090 0.1008437099 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
3 Hb_000025_330 0.1082967071 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
4 Hb_001691_150 0.1119805235 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
5 Hb_000418_070 0.1147781541 - - auxin:hydrogen symporter, putative [Ricinus communis]
6 Hb_003430_060 0.1164647545 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
7 Hb_000574_100 0.1200602731 - - DEAD-box protein abstrakt [Populus trichocarpa]
8 Hb_155396_010 0.1217072071 - - TMV resistance protein N, putative [Ricinus communis]
9 Hb_000080_150 0.122347135 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
10 Hb_004109_030 0.1230716162 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001357_040 0.1243826774 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
12 Hb_003078_020 0.1261354939 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_001864_060 0.1261652465 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_003373_040 0.1271591768 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
15 Hb_002890_090 0.1272947393 - - Auxin response factor 1 [Glycine soja]
16 Hb_001135_130 0.1275335186 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
17 Hb_093084_070 0.1292947676 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
18 Hb_000140_070 0.1298982028 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
19 Hb_000941_130 0.1300807271 - - gamma-tubulin complex component, putative [Ricinus communis]
20 Hb_001377_270 0.1304228048 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]

Gene co-expression network

sample Hb_000525_010 Hb_000525_010 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000025_330 Hb_000025_330 Hb_000525_010--Hb_000025_330 Hb_001691_150 Hb_001691_150 Hb_000525_010--Hb_001691_150 Hb_000418_070 Hb_000418_070 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_001674_030 Hb_001674_030 Hb_007850_090--Hb_001674_030 Hb_003544_110 Hb_003544_110 Hb_007850_090--Hb_003544_110 Hb_000072_120 Hb_000072_120 Hb_007850_090--Hb_000072_120 Hb_003078_020 Hb_003078_020 Hb_007850_090--Hb_003078_020 Hb_009627_030 Hb_009627_030 Hb_007850_090--Hb_009627_030 Hb_001864_060 Hb_001864_060 Hb_000025_330--Hb_001864_060 Hb_000140_070 Hb_000140_070 Hb_000025_330--Hb_000140_070 Hb_001247_120 Hb_001247_120 Hb_000025_330--Hb_001247_120 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_001123_290 Hb_001123_290 Hb_000025_330--Hb_001123_290 Hb_010831_020 Hb_010831_020 Hb_001691_150--Hb_010831_020 Hb_001691_150--Hb_000025_330 Hb_000665_010 Hb_000665_010 Hb_001691_150--Hb_000665_010 Hb_002739_150 Hb_002739_150 Hb_001691_150--Hb_002739_150 Hb_002837_110 Hb_002837_110 Hb_001691_150--Hb_002837_110 Hb_000987_140 Hb_000987_140 Hb_000418_070--Hb_000987_140 Hb_017987_020 Hb_017987_020 Hb_000418_070--Hb_017987_020 Hb_011311_020 Hb_011311_020 Hb_000418_070--Hb_011311_020 Hb_000836_270 Hb_000836_270 Hb_000418_070--Hb_000836_270 Hb_000179_140 Hb_000179_140 Hb_000418_070--Hb_000179_140 Hb_007508_080 Hb_007508_080 Hb_003430_060--Hb_007508_080 Hb_005321_020 Hb_005321_020 Hb_003430_060--Hb_005321_020 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_010697_040 Hb_010697_040 Hb_003430_060--Hb_010697_040 Hb_000563_640 Hb_000563_640 Hb_003430_060--Hb_000563_640 Hb_002615_090 Hb_002615_090 Hb_000574_100--Hb_002615_090 Hb_000922_370 Hb_000922_370 Hb_000574_100--Hb_000922_370 Hb_001472_090 Hb_001472_090 Hb_000574_100--Hb_001472_090 Hb_000941_130 Hb_000941_130 Hb_000574_100--Hb_000941_130 Hb_000574_070 Hb_000574_070 Hb_000574_100--Hb_000574_070 Hb_000878_180 Hb_000878_180 Hb_000574_100--Hb_000878_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.31267 16.1288 2.72343 11.981 8.89026 12.0164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30388 5.36516 9.19853 4.42759 2.64258

CAGE analysis