Hb_002837_110

Information

Type -
Description -
Location Contig2837: 117015-117941
Sequence    

Annotation

kegg
ID rcu:RCOM_1319760
description 3-hydroxyisobutyrate dehydrogenase, putative (EC:1.1.1.60)
nr
ID XP_012071334.1
description PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
swissprot
ID Q949M8
description Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial OS=Arabidopsis thaliana GN=At1g71180 PE=2 SV=1
trembl
ID A0A067L2Z3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05027 PE=4 SV=1
Gene Ontology
ID GO:0004616
description probable 3-hydroxyisobutyrate dehydrogenase-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_110 0.0 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
2 Hb_003106_030 0.100042506 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
3 Hb_000780_170 0.1008639109 - - PREDICTED: OBERON-like protein [Jatropha curcas]
4 Hb_005104_010 0.1022770465 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
5 Hb_007894_130 0.106677733 - - hypothetical protein RCOM_0584960 [Ricinus communis]
6 Hb_004371_010 0.1111267651 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
7 Hb_001054_030 0.1114470435 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
8 Hb_000540_120 0.1142109804 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
9 Hb_000574_100 0.1143512436 - - DEAD-box protein abstrakt [Populus trichocarpa]
10 Hb_001141_370 0.1155279516 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
11 Hb_000025_330 0.1162471295 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
12 Hb_144744_010 0.1167184824 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
13 Hb_000331_330 0.1175327099 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
14 Hb_000574_510 0.1178639262 - - protein kinase, putative [Ricinus communis]
15 Hb_001243_060 0.1178806114 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
16 Hb_001006_100 0.1208233548 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
17 Hb_000406_110 0.1212120947 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
18 Hb_157966_010 0.1217905377 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
19 Hb_000768_180 0.1221239212 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
20 Hb_001301_230 0.1222578653 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002837_110 Hb_002837_110 Hb_003106_030 Hb_003106_030 Hb_002837_110--Hb_003106_030 Hb_000780_170 Hb_000780_170 Hb_002837_110--Hb_000780_170 Hb_005104_010 Hb_005104_010 Hb_002837_110--Hb_005104_010 Hb_007894_130 Hb_007894_130 Hb_002837_110--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_002837_110--Hb_004371_010 Hb_001054_030 Hb_001054_030 Hb_002837_110--Hb_001054_030 Hb_003106_030--Hb_005104_010 Hb_002762_130 Hb_002762_130 Hb_003106_030--Hb_002762_130 Hb_000345_150 Hb_000345_150 Hb_003106_030--Hb_000345_150 Hb_000836_020 Hb_000836_020 Hb_003106_030--Hb_000836_020 Hb_010712_040 Hb_010712_040 Hb_003106_030--Hb_010712_040 Hb_002784_010 Hb_002784_010 Hb_003106_030--Hb_002784_010 Hb_008253_030 Hb_008253_030 Hb_000780_170--Hb_008253_030 Hb_000120_660 Hb_000120_660 Hb_000780_170--Hb_000120_660 Hb_001033_050 Hb_001033_050 Hb_000780_170--Hb_001033_050 Hb_001147_110 Hb_001147_110 Hb_000780_170--Hb_001147_110 Hb_000418_140 Hb_000418_140 Hb_000780_170--Hb_000418_140 Hb_000046_070 Hb_000046_070 Hb_000780_170--Hb_000046_070 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_004629_010 Hb_004629_010 Hb_005104_010--Hb_004629_010 Hb_005104_010--Hb_000120_660 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_005104_010--Hb_000345_150 Hb_001055_030 Hb_001055_030 Hb_007894_130--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_007894_130--Hb_000061_490 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_000094_320 Hb_000094_320 Hb_004371_010--Hb_000094_320 Hb_004371_010--Hb_000061_490 Hb_004371_010--Hb_000768_180 Hb_144744_010 Hb_144744_010 Hb_004371_010--Hb_144744_010 Hb_000347_120 Hb_000347_120 Hb_004371_010--Hb_000347_120 Hb_000735_160 Hb_000735_160 Hb_004371_010--Hb_000735_160 Hb_000260_640 Hb_000260_640 Hb_001054_030--Hb_000260_640 Hb_002253_080 Hb_002253_080 Hb_001054_030--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_001054_030--Hb_003729_030 Hb_000291_090 Hb_000291_090 Hb_001054_030--Hb_000291_090 Hb_006117_080 Hb_006117_080 Hb_001054_030--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001054_030--Hb_000321_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4505 76.0685 19.5032 29.4967 31.5463 61.378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6152 15.6945 14.1271 19.8016 18.815

CAGE analysis