Hb_000453_100

Information

Type -
Description -
Location Contig453: 51772-52895
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13150g
description hypothetical protein
nr
ID XP_011089462.1
description PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
swissprot
ID Q0IMG5
description Metallothionein-like protein 4A OS=Oryza sativa subsp. japonica GN=MT4A PE=2 SV=1
trembl
ID Q7XHJ3
description Metallothionein-like protein (Fragment) OS=Quercus robur PE=2 SV=1
Gene Ontology
ID GO:0046872
description metallothionein-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43257: 51785-52772
cDNA
(Sanger)
(ID:Location)		 005_J18.ab1: 51850-52772 , 008_F09.ab1: 51851-52772 , 008_J12.ab1: 51992-52772 , 010_P03.ab1: 51848-52772 , 011_N02.ab1: 51848-52772 , 014_G09.ab1: 51850-52772 , 016_B24.ab1: 51986-52772 , 016_C17.ab1: 51848-52772 , 017_C03.ab1: 52482-52772 , 019_C19.ab1: 51848-52772 , 024_A19.ab1: 52506-52772 , 025_G02.ab1: 51944-52771 , 025_L10.ab1: 51848-52772 , 027_B11.ab1: 52503-52772 , 031_P11.ab1: 51905-52772 , 038_F12.ab1: 51785-52771 , 041_A14.ab1: 52130-52654 , 041_M07.ab1: 51944-52771 , 041_O18.ab1: 52494-52772 , 047_M04.ab1: 51944-52771 , 048_G13.ab1: 51992-52772 , 049_P20.ab1: 51932-52766 , 052_K19.ab1: 51842-52772

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_100 0.0 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
2 Hb_000011_190 0.1247556864 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
3 Hb_001486_070 0.1351880801 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
4 Hb_003203_020 0.1376131611 - - unknown [Lotus japonicus]
5 Hb_008177_030 0.1377472218 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003430_060 0.1383199528 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
7 Hb_078477_050 0.1401141441 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
8 Hb_010697_040 0.1432996208 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
9 Hb_002111_060 0.1442689098 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
10 Hb_000157_200 0.1481955379 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
11 Hb_001976_090 0.1495531241 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
12 Hb_111973_010 0.1512883462 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_008143_070 0.1513763163 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
14 Hb_080313_010 0.151903769 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
15 Hb_005000_320 0.1519859186 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
16 Hb_007508_080 0.1526357198 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
17 Hb_027760_070 0.1527725316 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
18 Hb_006065_050 0.1538065398 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
19 Hb_010831_020 0.1547270076 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_000457_140 0.1568305869 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]

Gene co-expression network

sample Hb_000453_100 Hb_000453_100 Hb_000011_190 Hb_000011_190 Hb_000453_100--Hb_000011_190 Hb_001486_070 Hb_001486_070 Hb_000453_100--Hb_001486_070 Hb_003203_020 Hb_003203_020 Hb_000453_100--Hb_003203_020 Hb_008177_030 Hb_008177_030 Hb_000453_100--Hb_008177_030 Hb_003430_060 Hb_003430_060 Hb_000453_100--Hb_003430_060 Hb_078477_050 Hb_078477_050 Hb_000453_100--Hb_078477_050 Hb_005503_040 Hb_005503_040 Hb_000011_190--Hb_005503_040 Hb_004668_060 Hb_004668_060 Hb_000011_190--Hb_004668_060 Hb_000982_060 Hb_000982_060 Hb_000011_190--Hb_000982_060 Hb_007508_080 Hb_007508_080 Hb_000011_190--Hb_007508_080 Hb_001541_230 Hb_001541_230 Hb_000011_190--Hb_001541_230 Hb_005000_320 Hb_005000_320 Hb_000011_190--Hb_005000_320 Hb_000345_360 Hb_000345_360 Hb_001486_070--Hb_000345_360 Hb_004875_030 Hb_004875_030 Hb_001486_070--Hb_004875_030 Hb_001366_210 Hb_001366_210 Hb_001486_070--Hb_001366_210 Hb_000990_090 Hb_000990_090 Hb_001486_070--Hb_000990_090 Hb_000139_130 Hb_000139_130 Hb_001486_070--Hb_000139_130 Hb_001486_070--Hb_078477_050 Hb_005288_200 Hb_005288_200 Hb_003203_020--Hb_005288_200 Hb_000157_200 Hb_000157_200 Hb_003203_020--Hb_000157_200 Hb_003203_020--Hb_000011_190 Hb_000086_580 Hb_000086_580 Hb_003203_020--Hb_000086_580 Hb_155396_010 Hb_155396_010 Hb_003203_020--Hb_155396_010 Hb_008177_030--Hb_078477_050 Hb_008143_070 Hb_008143_070 Hb_008177_030--Hb_008143_070 Hb_004974_010 Hb_004974_010 Hb_008177_030--Hb_004974_010 Hb_003747_010 Hb_003747_010 Hb_008177_030--Hb_003747_010 Hb_080313_010 Hb_080313_010 Hb_008177_030--Hb_080313_010 Hb_001140_350 Hb_001140_350 Hb_008177_030--Hb_001140_350 Hb_003430_060--Hb_007508_080 Hb_005321_020 Hb_005321_020 Hb_003430_060--Hb_005321_020 Hb_000574_100 Hb_000574_100 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_010697_040 Hb_010697_040 Hb_003430_060--Hb_010697_040 Hb_000563_640 Hb_000563_640 Hb_003430_060--Hb_000563_640 Hb_078477_050--Hb_001140_350 Hb_078477_050--Hb_001366_210 Hb_002111_060 Hb_002111_060 Hb_078477_050--Hb_002111_060 Hb_078477_050--Hb_080313_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3887.93 3100.65 696.536 3805.31 1930.47 3406.77
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1652.66 626.237 701.886 1485.01 828.077

CAGE analysis