Hb_000939_010

Information

Type -
Description -
Location Contig939: 12033-14417
Sequence    

Annotation

kegg
ID pmum:103335163
description transcription factor bHLH113
nr
ID XP_012093202.1
description PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
swissprot
ID Q9LT67
description Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1
trembl
ID F6H6A3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00210 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor bhlh113-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000939_010 0.0 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
2 Hb_000415_060 0.2030515633 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
3 Hb_000347_500 0.2214821944 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
4 Hb_000061_390 0.2261499736 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
5 Hb_071869_010 0.2425854426 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
6 Hb_000445_080 0.2656517758 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
7 Hb_000768_060 0.2676511972 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
8 Hb_024272_010 0.27152834 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
9 Hb_006723_020 0.2758314459 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
10 Hb_000307_250 0.2786063917 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
11 Hb_000217_050 0.2795469324 - - elongation factor 1-alpha, putative [Ricinus communis]
12 Hb_010317_030 0.2814098874 - - unknown [Picea sitchensis]
13 Hb_001195_390 0.285706461 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
14 Hb_007827_020 0.2876212203 - - -
15 Hb_000035_120 0.2879246114 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
16 Hb_002243_040 0.2880370757 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
17 Hb_000028_160 0.2882645563 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
18 Hb_000538_080 0.2894539237 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_000326_030 0.2897794782 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
20 Hb_034722_010 0.2913304248 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000939_010 Hb_000939_010 Hb_000415_060 Hb_000415_060 Hb_000939_010--Hb_000415_060 Hb_000347_500 Hb_000347_500 Hb_000939_010--Hb_000347_500 Hb_000061_390 Hb_000061_390 Hb_000939_010--Hb_000061_390 Hb_071869_010 Hb_071869_010 Hb_000939_010--Hb_071869_010 Hb_000445_080 Hb_000445_080 Hb_000939_010--Hb_000445_080 Hb_000768_060 Hb_000768_060 Hb_000939_010--Hb_000768_060 Hb_000028_160 Hb_000028_160 Hb_000415_060--Hb_000028_160 Hb_152079_010 Hb_152079_010 Hb_000415_060--Hb_152079_010 Hb_000415_060--Hb_000347_500 Hb_011030_010 Hb_011030_010 Hb_000415_060--Hb_011030_010 Hb_046931_010 Hb_046931_010 Hb_000415_060--Hb_046931_010 Hb_021420_010 Hb_021420_010 Hb_000415_060--Hb_021420_010 Hb_000326_030 Hb_000326_030 Hb_000347_500--Hb_000326_030 Hb_006698_050 Hb_006698_050 Hb_000347_500--Hb_006698_050 Hb_000270_560 Hb_000270_560 Hb_000347_500--Hb_000270_560 Hb_001749_010 Hb_001749_010 Hb_000347_500--Hb_001749_010 Hb_001049_030 Hb_001049_030 Hb_000061_390--Hb_001049_030 Hb_004310_050 Hb_004310_050 Hb_000061_390--Hb_004310_050 Hb_012573_080 Hb_012573_080 Hb_000061_390--Hb_012573_080 Hb_000173_400 Hb_000173_400 Hb_000061_390--Hb_000173_400 Hb_000987_140 Hb_000987_140 Hb_000061_390--Hb_000987_140 Hb_000011_080 Hb_000011_080 Hb_000061_390--Hb_000011_080 Hb_000206_190 Hb_000206_190 Hb_071869_010--Hb_000206_190 Hb_002154_070 Hb_002154_070 Hb_071869_010--Hb_002154_070 Hb_000928_050 Hb_000928_050 Hb_071869_010--Hb_000928_050 Hb_024272_010 Hb_024272_010 Hb_071869_010--Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_071869_010--Hb_010317_030 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_168343_010 Hb_168343_010 Hb_000445_080--Hb_168343_010 Hb_001846_050 Hb_001846_050 Hb_000445_080--Hb_001846_050 Hb_006455_080 Hb_006455_080 Hb_000445_080--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_000445_080--Hb_094647_010 Hb_000878_130 Hb_000878_130 Hb_000445_080--Hb_000878_130 Hb_006198_050 Hb_006198_050 Hb_000445_080--Hb_006198_050 Hb_001609_010 Hb_001609_010 Hb_000768_060--Hb_001609_010 Hb_001322_210 Hb_001322_210 Hb_000768_060--Hb_001322_210 Hb_000236_250 Hb_000236_250 Hb_000768_060--Hb_000236_250 Hb_001871_040 Hb_001871_040 Hb_000768_060--Hb_001871_040 Hb_011318_010 Hb_011318_010 Hb_000768_060--Hb_011318_010 Hb_017075_010 Hb_017075_010 Hb_000768_060--Hb_017075_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.009 0.646316 0.0890138 0.319188 0.0568657 2.97534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130221 0.153594 1.11406 0.144928 0.515235

CAGE analysis