Hb_001749_010

Information

Type -
Description -
Location Contig1749: 29683-30648
Sequence    

Annotation

kegg
ID vvi:104878334
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID KDP36387.1
description hypothetical protein JCGZ_08656 [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067KJT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08656 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001749_010 0.0 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
2 Hb_000326_030 0.1959799486 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
3 Hb_129722_010 0.2052345887 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
4 Hb_001606_080 0.2136372118 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
5 Hb_002735_040 0.22470956 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
6 Hb_000347_500 0.2304652635 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
7 Hb_000415_060 0.2315180332 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
8 Hb_000453_150 0.2379888349 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_002863_100 0.2389703794 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
10 Hb_000028_160 0.243828282 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
11 Hb_000815_140 0.2474447031 - - cytochrome P450, putative [Ricinus communis]
12 Hb_063804_010 0.2496936229 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_151628_010 0.2510903406 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_021420_010 0.2568547835 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
15 Hb_026206_020 0.2572690947 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
16 Hb_148121_080 0.2640848215 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
17 Hb_129067_010 0.2660865934 - - Cytochrome P450 superfamily protein [Theobroma cacao]
18 Hb_000157_200 0.2689352928 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
19 Hb_059464_010 0.2698560784 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002843_050 0.27691166 - - scab resistance family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001749_010 Hb_001749_010 Hb_000326_030 Hb_000326_030 Hb_001749_010--Hb_000326_030 Hb_129722_010 Hb_129722_010 Hb_001749_010--Hb_129722_010 Hb_001606_080 Hb_001606_080 Hb_001749_010--Hb_001606_080 Hb_002735_040 Hb_002735_040 Hb_001749_010--Hb_002735_040 Hb_000347_500 Hb_000347_500 Hb_001749_010--Hb_000347_500 Hb_000415_060 Hb_000415_060 Hb_001749_010--Hb_000415_060 Hb_000326_030--Hb_000347_500 Hb_000326_030--Hb_000415_060 Hb_000326_030--Hb_001606_080 Hb_151628_010 Hb_151628_010 Hb_000326_030--Hb_151628_010 Hb_000326_030--Hb_129722_010 Hb_000453_150 Hb_000453_150 Hb_129722_010--Hb_000453_150 Hb_001481_160 Hb_001481_160 Hb_129722_010--Hb_001481_160 Hb_000157_200 Hb_000157_200 Hb_129722_010--Hb_000157_200 Hb_013726_070 Hb_013726_070 Hb_129722_010--Hb_013726_070 Hb_148121_080 Hb_148121_080 Hb_129722_010--Hb_148121_080 Hb_005976_050 Hb_005976_050 Hb_001606_080--Hb_005976_050 Hb_026206_020 Hb_026206_020 Hb_001606_080--Hb_026206_020 Hb_001366_120 Hb_001366_120 Hb_001606_080--Hb_001366_120 Hb_027402_140 Hb_027402_140 Hb_001606_080--Hb_027402_140 Hb_000365_070 Hb_000365_070 Hb_001606_080--Hb_000365_070 Hb_006649_080 Hb_006649_080 Hb_001606_080--Hb_006649_080 Hb_105085_010 Hb_105085_010 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050 Hb_000347_500--Hb_000415_060 Hb_006698_050 Hb_006698_050 Hb_000347_500--Hb_006698_050 Hb_000939_010 Hb_000939_010 Hb_000347_500--Hb_000939_010 Hb_000270_560 Hb_000270_560 Hb_000347_500--Hb_000270_560 Hb_000028_160 Hb_000028_160 Hb_000415_060--Hb_000028_160 Hb_152079_010 Hb_152079_010 Hb_000415_060--Hb_152079_010 Hb_011030_010 Hb_011030_010 Hb_000415_060--Hb_011030_010 Hb_046931_010 Hb_046931_010 Hb_000415_060--Hb_046931_010 Hb_021420_010 Hb_021420_010 Hb_000415_060--Hb_021420_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.3886 1.13062 0.372405 0.418107 0.109747 1.61914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211668 0.124853 1.06994 1.47407 0.509538

CAGE analysis