Hb_013726_070

Information

Type -
Description -
Location Contig13726: 72998-81128
Sequence    

Annotation

kegg
ID bvg:104900555
description UPF0202 protein At3g57940-like
nr
ID XP_012081308.1
description PREDICTED: UPF0202 protein At1g10490-like [Jatropha curcas]
swissprot
ID Q9XIK4
description UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2
trembl
ID A0A067JXI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14452 PE=4 SV=1
Gene Ontology
ID GO:0008080
description upf0202 protein at1g10490-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013726_070 0.0 - - PREDICTED: UPF0202 protein At1g10490-like [Jatropha curcas]
2 Hb_001481_160 0.1615187101 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
3 Hb_162150_010 0.1616635344 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000071_170 0.1648494159 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
5 Hb_002344_060 0.1705026256 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
6 Hb_004586_350 0.1709817114 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
7 Hb_000441_150 0.1776493596 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_006452_100 0.1814391932 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
9 Hb_005000_260 0.1847552333 - - recA family protein [Populus trichocarpa]
10 Hb_009079_030 0.1854924164 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
11 Hb_025336_020 0.1858782132 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
12 Hb_084481_010 0.1864127413 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
13 Hb_002153_030 0.186863707 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
14 Hb_002889_030 0.1875346385 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
15 Hb_005396_150 0.1877766306 - - protein binding protein, putative [Ricinus communis]
16 Hb_000453_150 0.1886798364 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_007747_080 0.1890415492 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001840_090 0.1892080702 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
19 Hb_000140_480 0.1893899792 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
20 Hb_003177_020 0.1911206616 - - diphthine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_013726_070 Hb_013726_070 Hb_001481_160 Hb_001481_160 Hb_013726_070--Hb_001481_160 Hb_162150_010 Hb_162150_010 Hb_013726_070--Hb_162150_010 Hb_000071_170 Hb_000071_170 Hb_013726_070--Hb_000071_170 Hb_002344_060 Hb_002344_060 Hb_013726_070--Hb_002344_060 Hb_004586_350 Hb_004586_350 Hb_013726_070--Hb_004586_350 Hb_000441_150 Hb_000441_150 Hb_013726_070--Hb_000441_150 Hb_001481_160--Hb_162150_010 Hb_002693_060 Hb_002693_060 Hb_001481_160--Hb_002693_060 Hb_006698_040 Hb_006698_040 Hb_001481_160--Hb_006698_040 Hb_001160_070 Hb_001160_070 Hb_001481_160--Hb_001160_070 Hb_008221_170 Hb_008221_170 Hb_001481_160--Hb_008221_170 Hb_000856_180 Hb_000856_180 Hb_001481_160--Hb_000856_180 Hb_004994_090 Hb_004994_090 Hb_162150_010--Hb_004994_090 Hb_005489_140 Hb_005489_140 Hb_162150_010--Hb_005489_140 Hb_049436_010 Hb_049436_010 Hb_162150_010--Hb_049436_010 Hb_162150_010--Hb_002344_060 Hb_062416_010 Hb_062416_010 Hb_162150_010--Hb_062416_010 Hb_002874_090 Hb_002874_090 Hb_162150_010--Hb_002874_090 Hb_000210_250 Hb_000210_250 Hb_000071_170--Hb_000210_250 Hb_002447_080 Hb_002447_080 Hb_000071_170--Hb_002447_080 Hb_005539_340 Hb_005539_340 Hb_000071_170--Hb_005539_340 Hb_002007_150 Hb_002007_150 Hb_000071_170--Hb_002007_150 Hb_002820_030 Hb_002820_030 Hb_000071_170--Hb_002820_030 Hb_006502_060 Hb_006502_060 Hb_000071_170--Hb_006502_060 Hb_000152_660 Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_001878_050 Hb_001878_050 Hb_002344_060--Hb_001878_050 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_002344_060--Hb_000441_150 Hb_015175_050 Hb_015175_050 Hb_002344_060--Hb_015175_050 Hb_011716_070 Hb_011716_070 Hb_002344_060--Hb_011716_070 Hb_009079_030 Hb_009079_030 Hb_004586_350--Hb_009079_030 Hb_002477_090 Hb_002477_090 Hb_004586_350--Hb_002477_090 Hb_006198_120 Hb_006198_120 Hb_004586_350--Hb_006198_120 Hb_025336_020 Hb_025336_020 Hb_004586_350--Hb_025336_020 Hb_000920_300 Hb_000920_300 Hb_004586_350--Hb_000920_300 Hb_012022_080 Hb_012022_080 Hb_004586_350--Hb_012022_080 Hb_000221_250 Hb_000221_250 Hb_000441_150--Hb_000221_250 Hb_000441_150--Hb_015175_050 Hb_010417_080 Hb_010417_080 Hb_000441_150--Hb_010417_080 Hb_000441_150--Hb_000152_660 Hb_002667_060 Hb_002667_060 Hb_000441_150--Hb_002667_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923499 0.549144 0.297307 0.52047 0.0539263 0.516918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.391878 0.472857 0.295422 1.14912 0.32955

CAGE analysis