Hb_006698_040

Information

Type -
Description -
Location Contig6698: 32622-35844
Sequence    

Annotation

kegg
ID rcu:RCOM_0633820
description hypothetical protein
nr
ID ACZ04445.1
description bHLH1 transcription factor [Hevea brasiliensis]
swissprot
ID Q9ASX9
description Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1
trembl
ID D6BP02
description BHLH1 transcription factor OS=Hevea brasiliensis GN=bHLH1 PE=2 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh144-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53382: 32573-36227 , PASA_asmbl_53383: 33569-36227 , PASA_asmbl_53384: 32879-33354 , PASA_asmbl_53387: 34662-34841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006698_040 0.0 - - bHLH1 transcription factor [Hevea brasiliensis]
2 Hb_084646_010 0.1076947844 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
3 Hb_001584_120 0.1093589898 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
4 Hb_155159_020 0.1097541718 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
5 Hb_000025_630 0.1147477538 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
6 Hb_187679_010 0.1168148496 - - -
7 Hb_172632_120 0.1183667498 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000205_300 0.1215966232 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
9 Hb_000603_150 0.1220220268 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
10 Hb_028227_070 0.1254020804 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_000025_180 0.1258384252 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
12 Hb_074715_010 0.1286245754 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
13 Hb_001922_050 0.1294506912 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
14 Hb_000125_080 0.1305189378 transcription factor TF Family: mTERF -
15 Hb_005269_040 0.1306500447 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
16 Hb_010142_030 0.1318848391 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001635_090 0.1325270283 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
18 Hb_050454_010 0.1325329813 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
19 Hb_044736_010 0.1333240468 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000023_280 0.1337427825 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]

Gene co-expression network

sample Hb_006698_040 Hb_006698_040 Hb_084646_010 Hb_084646_010 Hb_006698_040--Hb_084646_010 Hb_001584_120 Hb_001584_120 Hb_006698_040--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_006698_040--Hb_155159_020 Hb_000025_630 Hb_000025_630 Hb_006698_040--Hb_000025_630 Hb_187679_010 Hb_187679_010 Hb_006698_040--Hb_187679_010 Hb_172632_120 Hb_172632_120 Hb_006698_040--Hb_172632_120 Hb_000116_270 Hb_000116_270 Hb_084646_010--Hb_000116_270 Hb_001016_120 Hb_001016_120 Hb_084646_010--Hb_001016_120 Hb_084646_010--Hb_155159_020 Hb_000787_020 Hb_000787_020 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_001159_130 Hb_001159_130 Hb_084646_010--Hb_001159_130 Hb_001500_140 Hb_001500_140 Hb_001584_120--Hb_001500_140 Hb_001635_090 Hb_001635_090 Hb_001584_120--Hb_001635_090 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_001252_120 Hb_001252_120 Hb_001584_120--Hb_001252_120 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_028227_070 Hb_028227_070 Hb_001584_120--Hb_028227_070 Hb_155159_020--Hb_001159_130 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_155159_020--Hb_000116_270 Hb_155159_020--Hb_000603_150 Hb_155159_020--Hb_000787_020 Hb_000025_630--Hb_172632_120 Hb_012322_020 Hb_012322_020 Hb_000025_630--Hb_012322_020 Hb_000025_180 Hb_000025_180 Hb_000025_630--Hb_000025_180 Hb_002235_210 Hb_002235_210 Hb_000025_630--Hb_002235_210 Hb_001699_100 Hb_001699_100 Hb_000025_630--Hb_001699_100 Hb_007441_190 Hb_007441_190 Hb_000025_630--Hb_007441_190 Hb_187679_010--Hb_001159_130 Hb_187679_010--Hb_155159_020 Hb_001936_010 Hb_001936_010 Hb_187679_010--Hb_001936_010 Hb_187679_010--Hb_027380_130 Hb_000300_500 Hb_000300_500 Hb_187679_010--Hb_000300_500 Hb_187679_010--Hb_084646_010 Hb_172632_120--Hb_000025_180 Hb_001408_040 Hb_001408_040 Hb_172632_120--Hb_001408_040 Hb_172632_120--Hb_000603_150 Hb_001959_110 Hb_001959_110 Hb_172632_120--Hb_001959_110 Hb_001142_030 Hb_001142_030 Hb_172632_120--Hb_001142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.153 65.07 49.3299 149.9 48.2464 92.5725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.5837 81.8061 96.2935 112.5 25.6631

CAGE analysis