Hb_000270_560

Information

Type -
Description -
Location Contig270: 442574-444208
Sequence    

Annotation

kegg
ID rcu:RCOM_1512460
description ubiquitin-protein ligase, putative
nr
ID XP_012080138.1
description PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
swissprot
ID Q9FJP6
description U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1
trembl
ID A0A067KH44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11525 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_J17.ab1: 442545-443239 , 028_L14.ab1: 442545-443272 , 041_N11.ab1: 442545-443288

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_560 0.0 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
2 Hb_001769_010 0.1319668122 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010128_070 0.139291257 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_003106_150 0.1425183636 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
5 Hb_007680_020 0.1554152743 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_001049_030 0.1555723625 - - catalytic, putative [Ricinus communis]
7 Hb_003411_110 0.1560107714 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
8 Hb_017075_030 0.1564683998 - - helicase, putative [Ricinus communis]
9 Hb_006615_100 0.165510712 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
10 Hb_155702_010 0.1655366754 - - Tetraspanin-5 [Gossypium arboreum]
11 Hb_002928_160 0.1663858991 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
12 Hb_161072_030 0.1688538432 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
13 Hb_007403_050 0.169193254 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
14 Hb_005291_040 0.1693578019 - - PREDICTED: gamma-gliadin [Jatropha curcas]
15 Hb_003878_140 0.1723298114 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
16 Hb_000336_270 0.1726437403 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
17 Hb_000028_160 0.1733358582 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
18 Hb_000281_010 0.1734955708 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
19 Hb_010738_010 0.1749237073 - - PREDICTED: B2 protein [Jatropha curcas]
20 Hb_006346_040 0.1752067468 - - hypothetical protein JCGZ_20335 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_560 Hb_000270_560 Hb_001769_010 Hb_001769_010 Hb_000270_560--Hb_001769_010 Hb_010128_070 Hb_010128_070 Hb_000270_560--Hb_010128_070 Hb_003106_150 Hb_003106_150 Hb_000270_560--Hb_003106_150 Hb_007680_020 Hb_007680_020 Hb_000270_560--Hb_007680_020 Hb_001049_030 Hb_001049_030 Hb_000270_560--Hb_001049_030 Hb_003411_110 Hb_003411_110 Hb_000270_560--Hb_003411_110 Hb_010128_090 Hb_010128_090 Hb_001769_010--Hb_010128_090 Hb_000865_080 Hb_000865_080 Hb_001769_010--Hb_000865_080 Hb_155702_010 Hb_155702_010 Hb_001769_010--Hb_155702_010 Hb_023827_040 Hb_023827_040 Hb_001769_010--Hb_023827_040 Hb_003878_140 Hb_003878_140 Hb_001769_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_001769_010--Hb_000224_060 Hb_010128_070--Hb_003106_150 Hb_000281_010 Hb_000281_010 Hb_010128_070--Hb_000281_010 Hb_017075_030 Hb_017075_030 Hb_010128_070--Hb_017075_030 Hb_009620_030 Hb_009620_030 Hb_010128_070--Hb_009620_030 Hb_006615_100 Hb_006615_100 Hb_010128_070--Hb_006615_100 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460 Hb_003106_150--Hb_017075_030 Hb_002849_080 Hb_002849_080 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_000504_160 Hb_000504_160 Hb_003106_150--Hb_000504_160 Hb_003106_150--Hb_010128_090 Hb_007680_020--Hb_006615_100 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_001195_150 Hb_001195_150 Hb_007680_020--Hb_001195_150 Hb_000307_250 Hb_000307_250 Hb_007680_020--Hb_000307_250 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_007680_020--Hb_000281_010 Hb_006573_200 Hb_006573_200 Hb_001049_030--Hb_006573_200 Hb_011218_070 Hb_011218_070 Hb_001049_030--Hb_011218_070 Hb_000077_230 Hb_000077_230 Hb_001049_030--Hb_000077_230 Hb_012395_220 Hb_012395_220 Hb_001049_030--Hb_012395_220 Hb_042038_020 Hb_042038_020 Hb_001049_030--Hb_042038_020 Hb_000953_010 Hb_000953_010 Hb_001049_030--Hb_000953_010 Hb_000832_030 Hb_000832_030 Hb_003411_110--Hb_000832_030 Hb_116086_010 Hb_116086_010 Hb_003411_110--Hb_116086_010 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_000334_220 Hb_000334_220 Hb_003411_110--Hb_000334_220 Hb_000084_030 Hb_000084_030 Hb_003411_110--Hb_000084_030 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.703 107.828 32.3258 19.9565 35.1516 93.6615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5149 25.4467 41.959 15.2766 12.525

CAGE analysis