Hb_002843_050

Information

Type -
Description -
Location Contig2843: 45211-47952
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11730g
description POPTRDRAFT_566442; scab resistance family protein
nr
ID XP_002315858.2
description scab resistance family protein [Populus trichocarpa]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID B9HW18
description Scab resistance family protein OS=Populus trichocarpa GN=POPTR_0010s11730g PE=4 SV=2
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_050 0.0 - - scab resistance family protein [Populus trichocarpa]
2 Hb_002804_050 0.1569146148 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
3 Hb_055773_010 0.1649795678 - - -
4 Hb_105085_010 0.1880936611 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_000735_120 0.1955916283 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
6 Hb_005122_060 0.1968411497 - - unnamed protein product [Vitis vinifera]
7 Hb_001259_030 0.1981801634 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
8 Hb_001439_180 0.1990100362 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
9 Hb_002270_010 0.1994473658 - - Chaperone protein dnaJ, putative [Ricinus communis]
10 Hb_000329_050 0.1998029836 - - -
11 Hb_000076_290 0.1999992215 - - translation factor sui1, putative [Ricinus communis]
12 Hb_000029_160 0.2003916105 - - Nitrilase, putative [Ricinus communis]
13 Hb_060437_010 0.200407172 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
14 Hb_000331_480 0.200834862 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
15 Hb_001034_020 0.201078686 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
16 Hb_003050_090 0.2035097051 - - lupus la ribonucleoprotein, putative [Ricinus communis]
17 Hb_000310_080 0.2039547455 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
18 Hb_000787_100 0.2052203943 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
19 Hb_005144_040 0.2053485578 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
20 Hb_002735_040 0.2064519381 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]

Gene co-expression network

sample Hb_002843_050 Hb_002843_050 Hb_002804_050 Hb_002804_050 Hb_002843_050--Hb_002804_050 Hb_055773_010 Hb_055773_010 Hb_002843_050--Hb_055773_010 Hb_105085_010 Hb_105085_010 Hb_002843_050--Hb_105085_010 Hb_000735_120 Hb_000735_120 Hb_002843_050--Hb_000735_120 Hb_005122_060 Hb_005122_060 Hb_002843_050--Hb_005122_060 Hb_001259_030 Hb_001259_030 Hb_002843_050--Hb_001259_030 Hb_006615_100 Hb_006615_100 Hb_002804_050--Hb_006615_100 Hb_001529_060 Hb_001529_060 Hb_002804_050--Hb_001529_060 Hb_002849_080 Hb_002849_080 Hb_002804_050--Hb_002849_080 Hb_002783_050 Hb_002783_050 Hb_002804_050--Hb_002783_050 Hb_003106_150 Hb_003106_150 Hb_002804_050--Hb_003106_150 Hb_010128_070 Hb_010128_070 Hb_002804_050--Hb_010128_070 Hb_011457_110 Hb_011457_110 Hb_055773_010--Hb_011457_110 Hb_000614_080 Hb_000614_080 Hb_055773_010--Hb_000614_080 Hb_015401_020 Hb_015401_020 Hb_055773_010--Hb_015401_020 Hb_000076_290 Hb_000076_290 Hb_055773_010--Hb_000076_290 Hb_024399_010 Hb_024399_010 Hb_055773_010--Hb_024399_010 Hb_105085_010--Hb_002804_050 Hb_002735_040 Hb_002735_040 Hb_105085_010--Hb_002735_040 Hb_105085_010--Hb_005122_060 Hb_105085_010--Hb_006615_100 Hb_011344_170 Hb_011344_170 Hb_105085_010--Hb_011344_170 Hb_000046_450 Hb_000046_450 Hb_000735_120--Hb_000046_450 Hb_002270_010 Hb_002270_010 Hb_000735_120--Hb_002270_010 Hb_000367_290 Hb_000367_290 Hb_000735_120--Hb_000367_290 Hb_000172_550 Hb_000172_550 Hb_000735_120--Hb_000172_550 Hb_000116_280 Hb_000116_280 Hb_000735_120--Hb_000116_280 Hb_005399_020 Hb_005399_020 Hb_000735_120--Hb_005399_020 Hb_006816_410 Hb_006816_410 Hb_005122_060--Hb_006816_410 Hb_006588_050 Hb_006588_050 Hb_005122_060--Hb_006588_050 Hb_002105_080 Hb_002105_080 Hb_005122_060--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_005122_060--Hb_006816_300 Hb_000375_370 Hb_000375_370 Hb_005122_060--Hb_000375_370 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020 Hb_000640_210 Hb_000640_210 Hb_001259_030--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001259_030--Hb_060437_010 Hb_005028_010 Hb_005028_010 Hb_001259_030--Hb_005028_010 Hb_000613_020 Hb_000613_020 Hb_001259_030--Hb_000613_020 Hb_001140_080 Hb_001140_080 Hb_001259_030--Hb_001140_080 Hb_003050_090 Hb_003050_090 Hb_001259_030--Hb_003050_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87576 0.593436 0.0162102 0.0347303 0.702148 0.668404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239824 0.10065 0.384454 0.41441 0.187574

CAGE analysis