Hb_027402_140

Information

Type -
Description -
Location Contig27402: 105823-107340
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07210g
description POPTRDRAFT_553847; hypothetical protein
nr
ID XP_012080274.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
swissprot
ID Q9SN85
description Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
trembl
ID A0A067K583
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11633 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at3g47530

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28709: 106700-107081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
2 Hb_000313_060 0.1109105435 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
3 Hb_001584_150 0.1201351454 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
4 Hb_001930_010 0.1215912258 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
5 Hb_002636_050 0.1217603176 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
6 Hb_005914_150 0.1255970859 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
7 Hb_009486_200 0.1267236219 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
8 Hb_000193_310 0.1267493352 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
9 Hb_004452_010 0.127618826 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
10 Hb_001767_090 0.1294468509 - - ankyrin repeat protein [Bruguiera gymnorhiza]
11 Hb_000390_070 0.1299487571 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
12 Hb_008500_010 0.1304425937 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
13 Hb_000627_080 0.1322217656 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_002311_040 0.133395664 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
15 Hb_006316_040 0.1347249609 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
16 Hb_002986_130 0.1355269604 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
17 Hb_000204_210 0.1359630999 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
18 Hb_001266_060 0.1367821629 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
19 Hb_002678_020 0.1369464051 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
20 Hb_003216_080 0.1376173205 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]

Gene co-expression network

sample Hb_027402_140 Hb_027402_140 Hb_000313_060 Hb_000313_060 Hb_027402_140--Hb_000313_060 Hb_001584_150 Hb_001584_150 Hb_027402_140--Hb_001584_150 Hb_001930_010 Hb_001930_010 Hb_027402_140--Hb_001930_010 Hb_002636_050 Hb_002636_050 Hb_027402_140--Hb_002636_050 Hb_005914_150 Hb_005914_150 Hb_027402_140--Hb_005914_150 Hb_009486_200 Hb_009486_200 Hb_027402_140--Hb_009486_200 Hb_000313_060--Hb_001930_010 Hb_001439_140 Hb_001439_140 Hb_000313_060--Hb_001439_140 Hb_000878_010 Hb_000878_010 Hb_000313_060--Hb_000878_010 Hb_124315_020 Hb_124315_020 Hb_000313_060--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_000313_060--Hb_000514_060 Hb_000390_070 Hb_000390_070 Hb_000313_060--Hb_000390_070 Hb_008500_010 Hb_008500_010 Hb_001584_150--Hb_008500_010 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_001930_010--Hb_000390_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_001930_010--Hb_124315_020 Hb_001930_010--Hb_000514_060 Hb_001437_180 Hb_001437_180 Hb_002636_050--Hb_001437_180 Hb_004452_010 Hb_004452_010 Hb_002636_050--Hb_004452_010 Hb_002636_050--Hb_008500_010 Hb_001700_040 Hb_001700_040 Hb_002636_050--Hb_001700_040 Hb_002636_050--Hb_009486_200 Hb_002636_050--Hb_001584_150 Hb_005914_150--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_005914_150--Hb_000427_050 Hb_005914_150--Hb_001584_150 Hb_005914_150--Hb_002636_050 Hb_001266_060 Hb_001266_060 Hb_005914_150--Hb_001266_060 Hb_000230_080 Hb_000230_080 Hb_005914_150--Hb_000230_080 Hb_009486_200--Hb_002311_040 Hb_009486_200--Hb_008500_010 Hb_004143_130 Hb_004143_130 Hb_009486_200--Hb_004143_130 Hb_012656_030 Hb_012656_030 Hb_009486_200--Hb_012656_030 Hb_002678_020 Hb_002678_020 Hb_009486_200--Hb_002678_020 Hb_009486_200--Hb_000204_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52401 1.00846 0.401269 0.350341 0.899498 1.85037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.308035 0.702788 2.27758 0.986514 0.811586

CAGE analysis