Hb_005723_040

Information

Type -
Description -
Location Contig5723: 64080-67166
Sequence    

Annotation

kegg
ID rcu:RCOM_0976110
description tetracycline transporter, putative
nr
ID XP_012077706.1
description PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
swissprot
ID P02982
description Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2
trembl
ID A0A067KAP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13068 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49386: 64150-65705 , PASA_asmbl_49387: 65054-65176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005723_040 0.0 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
2 Hb_046440_010 0.2363292995 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
3 Hb_000943_030 0.2388676796 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000922_130 0.2432333353 - - hypothetical protein POPTR_0008s04925g [Populus trichocarpa]
5 Hb_013399_080 0.2660022885 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
6 Hb_071869_010 0.2676900345 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
7 Hb_000397_100 0.2736274744 - - hypothetical protein 31 [Hevea brasiliensis]
8 Hb_000397_120 0.2778370771 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
9 Hb_001366_120 0.2793653132 - - unknown [Zea mays]
10 Hb_011639_060 0.2800946632 - - Oligopeptide transporter, putative [Ricinus communis]
11 Hb_078897_010 0.2830689849 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
12 Hb_090497_010 0.2856362368 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
13 Hb_029921_020 0.2862166968 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
14 Hb_002863_120 0.2885800581 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
15 Hb_010317_030 0.297813327 - - unknown [Picea sitchensis]
16 Hb_006495_080 0.2982473259 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
17 Hb_024272_010 0.3004110687 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
18 Hb_004899_060 0.3010851885 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
19 Hb_005211_160 0.3012654671 - - Protein PNS1, putative [Ricinus communis]
20 Hb_001606_080 0.3025359186 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005723_040 Hb_005723_040 Hb_046440_010 Hb_046440_010 Hb_005723_040--Hb_046440_010 Hb_000943_030 Hb_000943_030 Hb_005723_040--Hb_000943_030 Hb_000922_130 Hb_000922_130 Hb_005723_040--Hb_000922_130 Hb_013399_080 Hb_013399_080 Hb_005723_040--Hb_013399_080 Hb_071869_010 Hb_071869_010 Hb_005723_040--Hb_071869_010 Hb_000397_100 Hb_000397_100 Hb_005723_040--Hb_000397_100 Hb_046440_010--Hb_000943_030 Hb_000415_060 Hb_000415_060 Hb_046440_010--Hb_000415_060 Hb_002243_040 Hb_002243_040 Hb_046440_010--Hb_002243_040 Hb_000326_030 Hb_000326_030 Hb_046440_010--Hb_000326_030 Hb_046440_010--Hb_000397_100 Hb_000943_030--Hb_000397_100 Hb_003106_010 Hb_003106_010 Hb_000943_030--Hb_003106_010 Hb_005211_160 Hb_005211_160 Hb_000943_030--Hb_005211_160 Hb_000031_030 Hb_000031_030 Hb_000943_030--Hb_000031_030 Hb_000258_080 Hb_000258_080 Hb_000943_030--Hb_000258_080 Hb_002326_050 Hb_002326_050 Hb_000943_030--Hb_002326_050 Hb_063912_010 Hb_063912_010 Hb_000922_130--Hb_063912_010 Hb_001195_390 Hb_001195_390 Hb_000922_130--Hb_001195_390 Hb_000922_130--Hb_046440_010 Hb_000939_010 Hb_000939_010 Hb_000922_130--Hb_000939_010 Hb_000922_130--Hb_002243_040 Hb_000397_120 Hb_000397_120 Hb_013399_080--Hb_000397_120 Hb_000096_080 Hb_000096_080 Hb_013399_080--Hb_000096_080 Hb_000069_710 Hb_000069_710 Hb_013399_080--Hb_000069_710 Hb_000207_100 Hb_000207_100 Hb_013399_080--Hb_000207_100 Hb_022174_010 Hb_022174_010 Hb_013399_080--Hb_022174_010 Hb_013399_080--Hb_000943_030 Hb_000206_190 Hb_000206_190 Hb_071869_010--Hb_000206_190 Hb_002154_070 Hb_002154_070 Hb_071869_010--Hb_002154_070 Hb_000928_050 Hb_000928_050 Hb_071869_010--Hb_000928_050 Hb_024272_010 Hb_024272_010 Hb_071869_010--Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_071869_010--Hb_010317_030 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_000397_100--Hb_005211_160 Hb_000792_090 Hb_000792_090 Hb_000397_100--Hb_000792_090 Hb_032215_050 Hb_032215_050 Hb_000397_100--Hb_032215_050 Hb_000928_020 Hb_000928_020 Hb_000397_100--Hb_000928_020 Hb_000397_100--Hb_000031_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.3063 1.79907 4.52476 22.7711 2.51156 29.181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 36.9541 5.32916 7.18475

CAGE analysis