Hb_000792_090

Information

Type -
Description -
Location Contig792: 133488-135529
Sequence    

Annotation

kegg
ID rcu:RCOM_0085230
description 3-beta-hydroxy-delta5-steroid dehydrogenase, putative
nr
ID XP_002527867.1
description 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9M392
description Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1
trembl
ID B9SPE8
description Reticulon-like protein OS=Ricinus communis GN=RCOM_0085230 PE=4 SV=1
Gene Ontology
ID GO:0005783
description reticulon-like protein b12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58401: 132440-132807 , PASA_asmbl_58402: 133483-135575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_090 0.0 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
2 Hb_000162_260 0.1153778436 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
3 Hb_005695_120 0.135314166 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
4 Hb_003470_090 0.1362821199 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
5 Hb_000125_080 0.137464878 transcription factor TF Family: mTERF -
6 Hb_001699_100 0.1417484968 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
7 Hb_000130_050 0.154284595 - - 14-3-3 protein, putative [Ricinus communis]
8 Hb_092337_010 0.1544955422 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
9 Hb_000656_040 0.1553029199 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
10 Hb_145314_010 0.1554884668 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
11 Hb_000264_110 0.157576284 - - PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
12 Hb_001135_140 0.1576669296 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
13 Hb_181810_020 0.1578610141 - - -
14 Hb_000229_040 0.1579713728 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
15 Hb_002445_120 0.1585249261 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_001700_030 0.160534296 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
17 Hb_001268_050 0.1605639935 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
18 Hb_003502_090 0.1623811544 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_000035_200 0.1629243267 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
20 Hb_001936_010 0.1632218891 - - hypothetical protein Csa_2G348280 [Cucumis sativus]

Gene co-expression network

sample Hb_000792_090 Hb_000792_090 Hb_000162_260 Hb_000162_260 Hb_000792_090--Hb_000162_260 Hb_005695_120 Hb_005695_120 Hb_000792_090--Hb_005695_120 Hb_003470_090 Hb_003470_090 Hb_000792_090--Hb_003470_090 Hb_000125_080 Hb_000125_080 Hb_000792_090--Hb_000125_080 Hb_001699_100 Hb_001699_100 Hb_000792_090--Hb_001699_100 Hb_000130_050 Hb_000130_050 Hb_000792_090--Hb_000130_050 Hb_000083_170 Hb_000083_170 Hb_000162_260--Hb_000083_170 Hb_001584_190 Hb_001584_190 Hb_000162_260--Hb_001584_190 Hb_037887_010 Hb_037887_010 Hb_000162_260--Hb_037887_010 Hb_012653_040 Hb_012653_040 Hb_000162_260--Hb_012653_040 Hb_066768_010 Hb_066768_010 Hb_000162_260--Hb_066768_010 Hb_000479_190 Hb_000479_190 Hb_000162_260--Hb_000479_190 Hb_005054_080 Hb_005054_080 Hb_005695_120--Hb_005054_080 Hb_002298_030 Hb_002298_030 Hb_005695_120--Hb_002298_030 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_004032_030 Hb_004032_030 Hb_005695_120--Hb_004032_030 Hb_003929_270 Hb_003929_270 Hb_005695_120--Hb_003929_270 Hb_000264_110 Hb_000264_110 Hb_005695_120--Hb_000264_110 Hb_003177_030 Hb_003177_030 Hb_003470_090--Hb_003177_030 Hb_000749_220 Hb_000749_220 Hb_003470_090--Hb_000749_220 Hb_000096_010 Hb_000096_010 Hb_003470_090--Hb_000096_010 Hb_005490_030 Hb_005490_030 Hb_003470_090--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_003470_090--Hb_001159_130 Hb_007460_020 Hb_007460_020 Hb_003470_090--Hb_007460_020 Hb_092337_010 Hb_092337_010 Hb_000125_080--Hb_092337_010 Hb_003108_020 Hb_003108_020 Hb_000125_080--Hb_003108_020 Hb_000406_080 Hb_000406_080 Hb_000125_080--Hb_000406_080 Hb_004473_040 Hb_004473_040 Hb_000125_080--Hb_004473_040 Hb_004705_100 Hb_004705_100 Hb_000125_080--Hb_004705_100 Hb_181385_010 Hb_181385_010 Hb_000125_080--Hb_181385_010 Hb_000453_160 Hb_000453_160 Hb_001699_100--Hb_000453_160 Hb_002053_140 Hb_002053_140 Hb_001699_100--Hb_002053_140 Hb_000300_630 Hb_000300_630 Hb_001699_100--Hb_000300_630 Hb_012796_020 Hb_012796_020 Hb_001699_100--Hb_012796_020 Hb_000025_630 Hb_000025_630 Hb_001699_100--Hb_000025_630 Hb_007441_190 Hb_007441_190 Hb_001699_100--Hb_007441_190 Hb_000130_050--Hb_000096_010 Hb_001014_040 Hb_001014_040 Hb_000130_050--Hb_001014_040 Hb_000108_070 Hb_000108_070 Hb_000130_050--Hb_000108_070 Hb_000538_070 Hb_000538_070 Hb_000130_050--Hb_000538_070 Hb_004079_030 Hb_004079_030 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86264 2.00369 3.74298 15.9491 6.38876 10.0782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82935 7.05292 12.2639 4.99157 0.985933

CAGE analysis