Hb_007460_020

Information

Type -
Description -
Location Contig7460: 21848-30517
Sequence    

Annotation

kegg
ID rcu:RCOM_1750690
description protein with unknown function
nr
ID XP_012079475.1
description PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
swissprot
ID O24653
description Guanosine nucleotide diphosphate dissociation inhibitor 2 OS=Arabidopsis thaliana GN=GDI2 PE=2 SV=1
trembl
ID A0A067LBG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17423 PE=4 SV=1
Gene Ontology
ID GO:0005093
description guanosine nucleotide diphosphate dissociation inhibitor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56687: 21845-30455 , PASA_asmbl_56688: 24268-24701 , PASA_asmbl_56690: 28814-29133
cDNA
(Sanger)
(ID:Location)		 001_J17.ab1: 27448-30420 , 003_N07.ab1: 27437-30364 , 024_J02.ab1: 28215-30362 , 024_P01.ab1: 27590-30363 , 029_C16.ab1: 28134-30420 , 029_G02.ab1: 28230-30347 , 029_O10.ab1: 28162-30366 , 032_K12.ab1: 27580-30366 , 044_M04.ab1: 27654-30420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007460_020 0.0 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
2 Hb_000159_090 0.0711185763 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
3 Hb_001159_130 0.0818851205 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
4 Hb_014834_050 0.0839542337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010964_040 0.0866889768 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
6 Hb_026198_070 0.0871669906 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
7 Hb_000116_270 0.0879854932 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
8 Hb_001004_070 0.0889401336 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007416_090 0.0899915024 - - UDP-sugar transporter, putative [Ricinus communis]
10 Hb_007638_030 0.0902050079 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
11 Hb_000200_020 0.0915776877 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
12 Hb_008970_030 0.0916396555 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_000212_380 0.0923213773 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
14 Hb_002909_140 0.0936936711 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
15 Hb_000028_180 0.0937097714 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_155159_020 0.0939352982 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
17 Hb_002169_050 0.0939961276 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
18 Hb_000019_030 0.0946106004 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
19 Hb_000096_010 0.0957806185 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
20 Hb_002809_050 0.0959293402 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007460_020 Hb_007460_020 Hb_000159_090 Hb_000159_090 Hb_007460_020--Hb_000159_090 Hb_001159_130 Hb_001159_130 Hb_007460_020--Hb_001159_130 Hb_014834_050 Hb_014834_050 Hb_007460_020--Hb_014834_050 Hb_010964_040 Hb_010964_040 Hb_007460_020--Hb_010964_040 Hb_026198_070 Hb_026198_070 Hb_007460_020--Hb_026198_070 Hb_000116_270 Hb_000116_270 Hb_007460_020--Hb_000116_270 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_000140_280 Hb_000140_280 Hb_000159_090--Hb_000140_280 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_000159_090--Hb_010964_040 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_001575_090 Hb_001575_090 Hb_014834_050--Hb_001575_090 Hb_003994_230 Hb_003994_230 Hb_014834_050--Hb_003994_230 Hb_000120_060 Hb_000120_060 Hb_014834_050--Hb_000120_060 Hb_014834_050--Hb_000159_090 Hb_023732_030 Hb_023732_030 Hb_014834_050--Hb_023732_030 Hb_010964_040--Hb_007638_030 Hb_004567_090 Hb_004567_090 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_002481_080 Hb_002481_080 Hb_010964_040--Hb_002481_080 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.372 86.7596 127.668 246.886 133.594 201.015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
190.697 124.968 267.725 219.185 119.171

CAGE analysis