Hb_003470_090

Information

Type -
Description -
Location Contig3470: 86157-92264
Sequence    

Annotation

kegg
ID rcu:RCOM_0342930
description RNA binding protein, putative
nr
ID XP_012080819.1
description PREDICTED: pumilio homolog 12 [Jatropha curcas]
swissprot
ID Q9LVC3
description Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
trembl
ID A0A067K6G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16188 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36277: 86248-87921 , PASA_asmbl_36278: 87932-88296 , PASA_asmbl_36280: 88573-91157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_090 0.0 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
2 Hb_003177_030 0.0864317166 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
3 Hb_000749_220 0.0887024749 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
4 Hb_000096_010 0.0955989169 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
5 Hb_005490_030 0.09884243 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
6 Hb_001159_130 0.1009814327 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
7 Hb_007460_020 0.1020235075 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
8 Hb_003502_090 0.105344454 - - ATP synthase subunit d, putative [Ricinus communis]
9 Hb_021443_100 0.1060437439 - - -
10 Hb_011671_240 0.1061829645 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
11 Hb_002809_050 0.1069793612 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
12 Hb_001004_070 0.1072650242 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000050_200 0.1080347688 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
14 Hb_001575_090 0.1084203648 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_003206_070 0.1100969185 - - organic anion transporter, putative [Ricinus communis]
16 Hb_000169_090 0.1111854812 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
17 Hb_155159_020 0.1113878226 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
18 Hb_001633_130 0.1115774646 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
19 Hb_002445_120 0.1120138384 - - secretory carrier membrane protein, putative [Ricinus communis]
20 Hb_001897_040 0.1121968461 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003470_090 Hb_003470_090 Hb_003177_030 Hb_003177_030 Hb_003470_090--Hb_003177_030 Hb_000749_220 Hb_000749_220 Hb_003470_090--Hb_000749_220 Hb_000096_010 Hb_000096_010 Hb_003470_090--Hb_000096_010 Hb_005490_030 Hb_005490_030 Hb_003470_090--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_003470_090--Hb_001159_130 Hb_007460_020 Hb_007460_020 Hb_003470_090--Hb_007460_020 Hb_003177_030--Hb_000749_220 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_000749_220--Hb_005490_030 Hb_000749_220--Hb_001159_130 Hb_000538_070 Hb_000538_070 Hb_000096_010--Hb_000538_070 Hb_000096_010--Hb_000749_220 Hb_000130_050 Hb_000130_050 Hb_000096_010--Hb_000130_050 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_005490_030--Hb_000172_290 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_001159_130--Hb_000019_030 Hb_000159_090 Hb_000159_090 Hb_007460_020--Hb_000159_090 Hb_007460_020--Hb_001159_130 Hb_014834_050 Hb_014834_050 Hb_007460_020--Hb_014834_050 Hb_010964_040 Hb_010964_040 Hb_007460_020--Hb_010964_040 Hb_026198_070 Hb_026198_070 Hb_007460_020--Hb_026198_070 Hb_007460_020--Hb_000116_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69749 1.44878 2.48785 7.34368 5.68597 5.18193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76875 4.61102 8.38844 4.43775 2.69156

CAGE analysis