Hb_000943_030

Information

Type -
Description -
Location Contig943: 17628-18413
Sequence    

Annotation

kegg
ID rcu:RCOM_0461200
description hypothetical protein
nr
ID XP_002531652.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T083
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0461200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63224: 17628-18104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000943_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000397_100 0.1646852357 - - hypothetical protein 31 [Hevea brasiliensis]
3 Hb_003106_010 0.1963403494 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
4 Hb_005211_160 0.2017344519 - - Protein PNS1, putative [Ricinus communis]
5 Hb_000031_030 0.20693139 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
6 Hb_000258_080 0.2086909463 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
7 Hb_002326_050 0.2128844697 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
8 Hb_000170_250 0.2149430604 - - hypothetical protein F775_29828 [Aegilops tauschii]
9 Hb_135810_010 0.2157764342 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
10 Hb_002903_090 0.2159869387 - - sugar transporter, putative [Ricinus communis]
11 Hb_007064_040 0.2164228571 - - hypothetical protein RCOM_0254640 [Ricinus communis]
12 Hb_013399_080 0.2175810036 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
13 Hb_001128_060 0.2187148031 - - amino acid permease, putative [Ricinus communis]
14 Hb_032215_050 0.2230845122 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
15 Hb_170193_010 0.2286107626 - - JHL25H03.10 [Jatropha curcas]
16 Hb_046440_010 0.2328858737 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
17 Hb_000134_110 0.2360835206 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera]
18 Hb_005723_040 0.2388676796 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
19 Hb_005167_040 0.2394743376 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
20 Hb_011287_090 0.2422024912 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]

Gene co-expression network

sample Hb_000943_030 Hb_000943_030 Hb_000397_100 Hb_000397_100 Hb_000943_030--Hb_000397_100 Hb_003106_010 Hb_003106_010 Hb_000943_030--Hb_003106_010 Hb_005211_160 Hb_005211_160 Hb_000943_030--Hb_005211_160 Hb_000031_030 Hb_000031_030 Hb_000943_030--Hb_000031_030 Hb_000258_080 Hb_000258_080 Hb_000943_030--Hb_000258_080 Hb_002326_050 Hb_002326_050 Hb_000943_030--Hb_002326_050 Hb_000397_100--Hb_005211_160 Hb_000792_090 Hb_000792_090 Hb_000397_100--Hb_000792_090 Hb_032215_050 Hb_032215_050 Hb_000397_100--Hb_032215_050 Hb_000928_020 Hb_000928_020 Hb_000397_100--Hb_000928_020 Hb_000397_100--Hb_000031_030 Hb_141939_010 Hb_141939_010 Hb_003106_010--Hb_141939_010 Hb_007064_040 Hb_007064_040 Hb_003106_010--Hb_007064_040 Hb_000836_630 Hb_000836_630 Hb_003106_010--Hb_000836_630 Hb_011639_050 Hb_011639_050 Hb_003106_010--Hb_011639_050 Hb_011287_090 Hb_011287_090 Hb_003106_010--Hb_011287_090 Hb_001946_280 Hb_001946_280 Hb_003106_010--Hb_001946_280 Hb_000139_380 Hb_000139_380 Hb_005211_160--Hb_000139_380 Hb_170193_010 Hb_170193_010 Hb_005211_160--Hb_170193_010 Hb_000041_150 Hb_000041_150 Hb_005211_160--Hb_000041_150 Hb_127003_010 Hb_127003_010 Hb_005211_160--Hb_127003_010 Hb_085863_020 Hb_085863_020 Hb_005211_160--Hb_085863_020 Hb_000080_190 Hb_000080_190 Hb_005211_160--Hb_000080_190 Hb_000364_010 Hb_000364_010 Hb_000031_030--Hb_000364_010 Hb_000204_040 Hb_000204_040 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_006487_050 Hb_006487_050 Hb_000031_030--Hb_006487_050 Hb_135810_010 Hb_135810_010 Hb_000258_080--Hb_135810_010 Hb_012390_010 Hb_012390_010 Hb_000258_080--Hb_012390_010 Hb_000258_430 Hb_000258_430 Hb_000258_080--Hb_000258_430 Hb_005167_040 Hb_005167_040 Hb_000258_080--Hb_005167_040 Hb_057183_040 Hb_057183_040 Hb_000258_080--Hb_057183_040 Hb_000258_080--Hb_000031_030 Hb_002326_050--Hb_011287_090 Hb_000077_130 Hb_000077_130 Hb_002326_050--Hb_000077_130 Hb_002326_050--Hb_003106_010 Hb_185467_020 Hb_185467_020 Hb_002326_050--Hb_185467_020 Hb_002326_050--Hb_170193_010 Hb_002326_050--Hb_127003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.6475 0.403993 0.303439 5.69736 2.56725 7.38277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27999 0.760543 9.90869 0.704068 1.41511

CAGE analysis