Hb_011639_050

Information

Type -
Description -
Location Contig11639: 45620-49971
Sequence    

Annotation

kegg
ID rcu:RCOM_0818110
description hypothetical protein
nr
ID XP_002518329.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RX60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0818110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05068: 30508-48876 , PASA_asmbl_05069: 47537-48340 , PASA_asmbl_05072: 49583-49938
cDNA
(Sanger)
(ID:Location)		 019_P23.ab1: 30514-48661 , 051_M19.ab1: 30514-48656

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000369_060 0.0871037277 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_002874_070 0.0947272127 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
4 Hb_000497_140 0.103866355 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
5 Hb_004440_100 0.1086785681 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
6 Hb_001946_280 0.1109896028 - - conserved hypothetical protein [Ricinus communis]
7 Hb_185467_010 0.1162214837 - - -
8 Hb_006091_030 0.118460415 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
9 Hb_001846_060 0.1248780073 - - hypothetical protein RCOM_0992860 [Ricinus communis]
10 Hb_007786_010 0.1252863317 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
11 Hb_001936_050 0.1268328757 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
12 Hb_000077_130 0.1276416086 - - PREDICTED: callose synthase 12 [Jatropha curcas]
13 Hb_011287_090 0.128253347 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
14 Hb_002928_060 0.1285870752 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
15 Hb_000742_250 0.1317411547 - - Tubulin beta-6 chain [Gossypium arboreum]
16 Hb_000490_030 0.1320387658 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
17 Hb_001584_110 0.1323774472 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
18 Hb_041091_010 0.1345326398 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
19 Hb_004993_010 0.1352638661 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
20 Hb_005322_030 0.1356594058 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_011639_050 Hb_011639_050 Hb_000369_060 Hb_000369_060 Hb_011639_050--Hb_000369_060 Hb_002874_070 Hb_002874_070 Hb_011639_050--Hb_002874_070 Hb_000497_140 Hb_000497_140 Hb_011639_050--Hb_000497_140 Hb_004440_100 Hb_004440_100 Hb_011639_050--Hb_004440_100 Hb_001946_280 Hb_001946_280 Hb_011639_050--Hb_001946_280 Hb_185467_010 Hb_185467_010 Hb_011639_050--Hb_185467_010 Hb_006091_030 Hb_006091_030 Hb_000369_060--Hb_006091_030 Hb_000369_060--Hb_004440_100 Hb_002400_270 Hb_002400_270 Hb_000369_060--Hb_002400_270 Hb_000369_060--Hb_002874_070 Hb_001846_060 Hb_001846_060 Hb_000369_060--Hb_001846_060 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_000016_110 Hb_000016_110 Hb_000497_140--Hb_000016_110 Hb_005399_010 Hb_005399_010 Hb_000497_140--Hb_005399_010 Hb_000497_140--Hb_006091_030 Hb_000106_040 Hb_000106_040 Hb_000497_140--Hb_000106_040 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590 Hb_005730_030 Hb_005730_030 Hb_004440_100--Hb_005730_030 Hb_004440_100--Hb_022256_040 Hb_004440_100--Hb_006091_030 Hb_004440_100--Hb_001584_110 Hb_001946_280--Hb_000369_060 Hb_002740_130 Hb_002740_130 Hb_001946_280--Hb_002740_130 Hb_008453_150 Hb_008453_150 Hb_001946_280--Hb_008453_150 Hb_003060_070 Hb_003060_070 Hb_001946_280--Hb_003060_070 Hb_001946_280--Hb_185467_010 Hb_024714_020 Hb_024714_020 Hb_185467_010--Hb_024714_020 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_185467_010--Hb_001936_050 Hb_185467_010--Hb_002874_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0008 2.51844 3.11745 1.53557 12.4027 15.4362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25127 2.49907 11.984 3.58103 1.61722

CAGE analysis