Hb_000397_120

Information

Type -
Description -
Location Contig397: 235707-239366
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12390g
description POPTRDRAFT_1107186; hypothetical protein
nr
ID XP_012081128.1
description PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
swissprot
ID Q54DS3
description Transmembrane protein DDB_G0292058 OS=Dictyostelium discoideum GN=DDB_G0292058 PE=2 SV=1
trembl
ID A0A067KEF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16981 PE=4 SV=1
Gene Ontology
ID GO:0009506
description envelope glycoprotein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39609: 235612-239284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_120 0.0 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
2 Hb_007810_100 0.1480384337 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
3 Hb_013399_080 0.1603784579 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
4 Hb_000069_710 0.1626992887 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
5 Hb_003376_050 0.1648743929 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_000189_510 0.1749591334 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
7 Hb_000022_200 0.1872033932 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
8 Hb_002942_060 0.1917799008 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_000056_040 0.1960769561 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
10 Hb_002078_160 0.1964061371 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_000850_050 0.1971296439 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
12 Hb_007904_210 0.1971770381 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
13 Hb_002559_040 0.1979502034 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
14 Hb_002248_110 0.2047054161 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
15 Hb_000019_150 0.2059739436 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
16 Hb_000397_100 0.2065357664 - - hypothetical protein 31 [Hevea brasiliensis]
17 Hb_000208_260 0.2074001002 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
18 Hb_001718_050 0.2078769584 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
19 Hb_007919_080 0.2091949886 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
20 Hb_028227_010 0.2098806419 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]

Gene co-expression network

sample Hb_000397_120 Hb_000397_120 Hb_007810_100 Hb_007810_100 Hb_000397_120--Hb_007810_100 Hb_013399_080 Hb_013399_080 Hb_000397_120--Hb_013399_080 Hb_000069_710 Hb_000069_710 Hb_000397_120--Hb_000069_710 Hb_003376_050 Hb_003376_050 Hb_000397_120--Hb_003376_050 Hb_000189_510 Hb_000189_510 Hb_000397_120--Hb_000189_510 Hb_000022_200 Hb_000022_200 Hb_000397_120--Hb_000022_200 Hb_000850_050 Hb_000850_050 Hb_007810_100--Hb_000850_050 Hb_018954_020 Hb_018954_020 Hb_007810_100--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_007810_100--Hb_000197_210 Hb_002159_040 Hb_002159_040 Hb_007810_100--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_007810_100--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_007810_100--Hb_000497_230 Hb_000096_080 Hb_000096_080 Hb_013399_080--Hb_000096_080 Hb_013399_080--Hb_000069_710 Hb_000207_100 Hb_000207_100 Hb_013399_080--Hb_000207_100 Hb_022174_010 Hb_022174_010 Hb_013399_080--Hb_022174_010 Hb_000943_030 Hb_000943_030 Hb_013399_080--Hb_000943_030 Hb_001143_190 Hb_001143_190 Hb_000069_710--Hb_001143_190 Hb_000352_120 Hb_000352_120 Hb_000069_710--Hb_000352_120 Hb_001482_040 Hb_001482_040 Hb_000069_710--Hb_001482_040 Hb_000019_150 Hb_000019_150 Hb_000069_710--Hb_000019_150 Hb_000056_040 Hb_000056_040 Hb_000069_710--Hb_000056_040 Hb_002942_060 Hb_002942_060 Hb_003376_050--Hb_002942_060 Hb_000797_050 Hb_000797_050 Hb_003376_050--Hb_000797_050 Hb_000606_080 Hb_000606_080 Hb_003376_050--Hb_000606_080 Hb_000649_050 Hb_000649_050 Hb_003376_050--Hb_000649_050 Hb_003376_050--Hb_000197_210 Hb_004375_130 Hb_004375_130 Hb_003376_050--Hb_004375_130 Hb_002750_050 Hb_002750_050 Hb_000189_510--Hb_002750_050 Hb_000189_510--Hb_003376_050 Hb_001266_140 Hb_001266_140 Hb_000189_510--Hb_001266_140 Hb_000189_510--Hb_002942_060 Hb_002836_140 Hb_002836_140 Hb_000189_510--Hb_002836_140 Hb_000189_510--Hb_000797_050 Hb_000261_330 Hb_000261_330 Hb_000022_200--Hb_000261_330 Hb_045770_010 Hb_045770_010 Hb_000022_200--Hb_045770_010 Hb_002900_080 Hb_002900_080 Hb_000022_200--Hb_002900_080 Hb_002485_030 Hb_002485_030 Hb_000022_200--Hb_002485_030 Hb_001085_260 Hb_001085_260 Hb_000022_200--Hb_001085_260 Hb_007904_210 Hb_007904_210 Hb_000022_200--Hb_007904_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.6091 5.44523 37.8828 50.4183 28.5479 72.6377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5386 5.79383 57.5585 13.0476 20.6333

CAGE analysis