Hb_000261_330

Information

Type -
Description -
Location Contig261: 294417-296776
Sequence    

Annotation

kegg
ID tcc:TCM_020311
description Endoplasmic reticulum retention defective 2B
nr
ID XP_011620833.1
description PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
swissprot
ID Q9ZTN2
description ER lumen protein-retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1
trembl
ID A0A061ESK8
description ER lumen protein-retaining receptor OS=Theobroma cacao GN=TCM_020311 PE=3 SV=1
Gene Ontology
ID GO:0005789
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_330 0.0 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
2 Hb_006405_050 0.1088331683 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
3 Hb_000022_200 0.1151837362 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
4 Hb_001085_260 0.1221114871 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
5 Hb_000300_200 0.1244825122 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
6 Hb_007017_080 0.1252883323 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_004324_390 0.1265316711 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
8 Hb_002485_030 0.1294535971 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
9 Hb_002900_080 0.1309239228 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
10 Hb_002960_150 0.1371847183 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
11 Hb_160256_010 0.1437157054 - - -
12 Hb_000170_200 0.1474927507 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
13 Hb_044662_060 0.1476626946 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
14 Hb_000103_120 0.1476979827 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
15 Hb_045770_010 0.1482025073 - - ER lumen protein retaining receptor [Populus trichocarpa]
16 Hb_006816_100 0.1492353566 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
17 Hb_024836_010 0.1526299822 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
18 Hb_007919_080 0.1537344713 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
19 Hb_001195_640 0.1551746193 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
20 Hb_000494_080 0.1551746609 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000261_330 Hb_000261_330 Hb_006405_050 Hb_006405_050 Hb_000261_330--Hb_006405_050 Hb_000022_200 Hb_000022_200 Hb_000261_330--Hb_000022_200 Hb_001085_260 Hb_001085_260 Hb_000261_330--Hb_001085_260 Hb_000300_200 Hb_000300_200 Hb_000261_330--Hb_000300_200 Hb_007017_080 Hb_007017_080 Hb_000261_330--Hb_007017_080 Hb_004324_390 Hb_004324_390 Hb_000261_330--Hb_004324_390 Hb_006816_100 Hb_006816_100 Hb_006405_050--Hb_006816_100 Hb_024836_010 Hb_024836_010 Hb_006405_050--Hb_024836_010 Hb_000494_080 Hb_000494_080 Hb_006405_050--Hb_000494_080 Hb_000115_080 Hb_000115_080 Hb_006405_050--Hb_000115_080 Hb_000808_050 Hb_000808_050 Hb_006405_050--Hb_000808_050 Hb_045770_010 Hb_045770_010 Hb_000022_200--Hb_045770_010 Hb_002900_080 Hb_002900_080 Hb_000022_200--Hb_002900_080 Hb_002485_030 Hb_002485_030 Hb_000022_200--Hb_002485_030 Hb_000022_200--Hb_001085_260 Hb_007904_210 Hb_007904_210 Hb_000022_200--Hb_007904_210 Hb_001085_260--Hb_002485_030 Hb_002960_150 Hb_002960_150 Hb_001085_260--Hb_002960_150 Hb_003760_030 Hb_003760_030 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_003119_090 Hb_003119_090 Hb_001085_260--Hb_003119_090 Hb_003935_060 Hb_003935_060 Hb_000300_200--Hb_003935_060 Hb_000920_010 Hb_000920_010 Hb_000300_200--Hb_000920_010 Hb_008566_040 Hb_008566_040 Hb_000300_200--Hb_008566_040 Hb_160256_010 Hb_160256_010 Hb_000300_200--Hb_160256_010 Hb_000300_200--Hb_002960_150 Hb_010577_030 Hb_010577_030 Hb_007017_080--Hb_010577_030 Hb_000227_190 Hb_000227_190 Hb_007017_080--Hb_000227_190 Hb_007017_080--Hb_002960_150 Hb_001799_030 Hb_001799_030 Hb_007017_080--Hb_001799_030 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_000103_120 Hb_000103_120 Hb_004324_390--Hb_000103_120 Hb_000890_130 Hb_000890_130 Hb_004324_390--Hb_000890_130 Hb_000340_130 Hb_000340_130 Hb_004324_390--Hb_000340_130 Hb_002686_080 Hb_002686_080 Hb_004324_390--Hb_002686_080 Hb_004324_390--Hb_160256_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.47567 1.46343 12.5441 9.92217 3.64818 4.9918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63312 2.74786 3.36482 2.09988 3.58872

CAGE analysis