Hb_006405_050

Information

Type -
Description -
Location Contig6405: 65822-76861
Sequence    

Annotation

kegg
ID rcu:RCOM_1632320
description hypothetical protein
nr
ID XP_012085914.1
description PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
swissprot
ID F4IIZ9
description Stomatal closure-related actin-binding protein 2 OS=Arabidopsis thaliana GN=SCAB2 PE=2 SV=1
trembl
ID B9RU60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1632320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52162: 32261-76834 , PASA_asmbl_52163: 32215-76799
cDNA
(Sanger)
(ID:Location)		 007_O22.ab1: 73913-76834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006405_050 0.0 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
2 Hb_000261_330 0.1088331683 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
3 Hb_006816_100 0.1299917293 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
4 Hb_024836_010 0.1326121988 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
5 Hb_000494_080 0.1343191975 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
6 Hb_000115_080 0.1363971187 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
7 Hb_000808_050 0.1364246635 - - exonuclease, putative [Ricinus communis]
8 Hb_007017_080 0.1364450461 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_002485_030 0.1393423733 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
10 Hb_002284_150 0.1406131082 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
11 Hb_001517_050 0.1418753143 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
12 Hb_003531_080 0.1451942149 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
13 Hb_000072_090 0.1472758975 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
14 Hb_001087_030 0.1476781471 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
15 Hb_171376_010 0.1478921736 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
16 Hb_012258_010 0.1481106312 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
17 Hb_001472_060 0.148173184 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
18 Hb_006816_090 0.1490233026 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
19 Hb_001085_260 0.1493166071 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
20 Hb_007290_030 0.1494467566 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]

Gene co-expression network

sample Hb_006405_050 Hb_006405_050 Hb_000261_330 Hb_000261_330 Hb_006405_050--Hb_000261_330 Hb_006816_100 Hb_006816_100 Hb_006405_050--Hb_006816_100 Hb_024836_010 Hb_024836_010 Hb_006405_050--Hb_024836_010 Hb_000494_080 Hb_000494_080 Hb_006405_050--Hb_000494_080 Hb_000115_080 Hb_000115_080 Hb_006405_050--Hb_000115_080 Hb_000808_050 Hb_000808_050 Hb_006405_050--Hb_000808_050 Hb_000022_200 Hb_000022_200 Hb_000261_330--Hb_000022_200 Hb_001085_260 Hb_001085_260 Hb_000261_330--Hb_001085_260 Hb_000300_200 Hb_000300_200 Hb_000261_330--Hb_000300_200 Hb_007017_080 Hb_007017_080 Hb_000261_330--Hb_007017_080 Hb_004324_390 Hb_004324_390 Hb_000261_330--Hb_004324_390 Hb_001277_280 Hb_001277_280 Hb_006816_100--Hb_001277_280 Hb_002284_210 Hb_002284_210 Hb_006816_100--Hb_002284_210 Hb_003760_030 Hb_003760_030 Hb_006816_100--Hb_003760_030 Hb_001517_050 Hb_001517_050 Hb_006816_100--Hb_001517_050 Hb_002485_030 Hb_002485_030 Hb_006816_100--Hb_002485_030 Hb_065755_030 Hb_065755_030 Hb_006816_100--Hb_065755_030 Hb_024836_010--Hb_002485_030 Hb_003688_040 Hb_003688_040 Hb_024836_010--Hb_003688_040 Hb_000300_690 Hb_000300_690 Hb_024836_010--Hb_000300_690 Hb_001817_150 Hb_001817_150 Hb_024836_010--Hb_001817_150 Hb_024836_010--Hb_001085_260 Hb_000635_040 Hb_000635_040 Hb_000494_080--Hb_000635_040 Hb_003929_170 Hb_003929_170 Hb_000494_080--Hb_003929_170 Hb_005895_010 Hb_005895_010 Hb_000494_080--Hb_005895_010 Hb_001087_030 Hb_001087_030 Hb_000494_080--Hb_001087_030 Hb_002876_320 Hb_002876_320 Hb_000494_080--Hb_002876_320 Hb_002965_040 Hb_002965_040 Hb_000494_080--Hb_002965_040 Hb_002311_380 Hb_002311_380 Hb_000115_080--Hb_002311_380 Hb_006570_150 Hb_006570_150 Hb_000115_080--Hb_006570_150 Hb_000115_080--Hb_003929_170 Hb_000115_080--Hb_001087_030 Hb_059480_010 Hb_059480_010 Hb_000115_080--Hb_059480_010 Hb_001723_150 Hb_001723_150 Hb_000115_080--Hb_001723_150 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_002542_020 Hb_002542_020 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_000599_180 Hb_000599_180 Hb_000808_050--Hb_000599_180 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_001472_060 Hb_001472_060 Hb_000808_050--Hb_001472_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1439 7.20505 24.5712 15.9081 6.78014 10.6165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9691 4.49674 10.9306 3.24765 7.42825

CAGE analysis