Hb_000300_200

Information

Type -
Description -
Location Contig300: 181729-185547
Sequence    

Annotation

kegg
ID tcc:TCM_025814
description Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
nr
ID XP_012070367.1
description PREDICTED: xylosyltransferase 1 [Jatropha curcas]
swissprot
ID Q5QQ56
description Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1
trembl
ID A0A067L6C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02659 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31564: 182214-185596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_200 0.0 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
2 Hb_003935_060 0.1167331985 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
3 Hb_000261_330 0.1244825122 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
4 Hb_000920_010 0.1339074086 - - hypothetical protein PRUPE_ppa013940mg [Prunus persica]
5 Hb_008566_040 0.1341568584 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
6 Hb_160256_010 0.1454248712 - - -
7 Hb_002960_150 0.1456909349 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
8 Hb_000566_070 0.1510242653 - - conserved hypothetical protein [Ricinus communis]
9 Hb_044662_060 0.151210039 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
10 Hb_001606_060 0.1544989904 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006405_050 0.1545309878 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
12 Hb_000359_290 0.1552471234 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
13 Hb_001328_030 0.1579781638 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
14 Hb_002874_180 0.1586476549 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
15 Hb_000333_080 0.159703397 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
16 Hb_107495_040 0.1600149913 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
17 Hb_004223_050 0.160401019 - - hexokinase [Manihot esculenta]
18 Hb_000365_130 0.1619048961 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
19 Hb_007017_080 0.1622522393 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_000022_200 0.1629694725 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_200 Hb_000300_200 Hb_003935_060 Hb_003935_060 Hb_000300_200--Hb_003935_060 Hb_000261_330 Hb_000261_330 Hb_000300_200--Hb_000261_330 Hb_000920_010 Hb_000920_010 Hb_000300_200--Hb_000920_010 Hb_008566_040 Hb_008566_040 Hb_000300_200--Hb_008566_040 Hb_160256_010 Hb_160256_010 Hb_000300_200--Hb_160256_010 Hb_002960_150 Hb_002960_150 Hb_000300_200--Hb_002960_150 Hb_001504_030 Hb_001504_030 Hb_003935_060--Hb_001504_030 Hb_000365_130 Hb_000365_130 Hb_003935_060--Hb_000365_130 Hb_001250_070 Hb_001250_070 Hb_003935_060--Hb_001250_070 Hb_000721_030 Hb_000721_030 Hb_003935_060--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_006405_050 Hb_006405_050 Hb_000261_330--Hb_006405_050 Hb_000022_200 Hb_000022_200 Hb_000261_330--Hb_000022_200 Hb_001085_260 Hb_001085_260 Hb_000261_330--Hb_001085_260 Hb_007017_080 Hb_007017_080 Hb_000261_330--Hb_007017_080 Hb_004324_390 Hb_004324_390 Hb_000261_330--Hb_004324_390 Hb_004586_430 Hb_004586_430 Hb_000920_010--Hb_004586_430 Hb_000920_010--Hb_160256_010 Hb_000108_050 Hb_000108_050 Hb_000920_010--Hb_000108_050 Hb_156850_100 Hb_156850_100 Hb_000920_010--Hb_156850_100 Hb_160271_010 Hb_160271_010 Hb_000920_010--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_000920_010--Hb_022693_130 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000181_060 Hb_000181_060 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_030545_010 Hb_030545_010 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.764 4.16965 34.7439 34.9754 15.4246 12.8332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9133 10.1893 11.8451 1.78132 17.7434

CAGE analysis