Hb_004586_430

Information

Type -
Description -
Location Contig4586: 460580-462780
Sequence    

Annotation

kegg
ID rcu:RCOM_1037540
description ribonucleoprotein, chloroplast, putative
nr
ID XP_012067930.1
description PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
swissprot
ID P19682
description 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1
trembl
ID A0A067L2G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15835 PE=4 SV=1
Gene Ontology
ID GO:0009507
description 28 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43579: 460590-462658
cDNA
(Sanger)
(ID:Location)		 017_L01.ab1: 460612-461710 , 038_O20.ab1: 460590-461716

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_430 0.0 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
2 Hb_001195_270 0.0957585888 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
3 Hb_000920_010 0.1036831577 - - hypothetical protein PRUPE_ppa013940mg [Prunus persica]
4 Hb_003752_070 0.1049648187 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
5 Hb_156850_100 0.1117687097 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
6 Hb_011310_140 0.1118879773 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
7 Hb_003883_010 0.1127352878 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
8 Hb_021650_010 0.1156531228 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
9 Hb_000108_050 0.1159941578 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
10 Hb_000703_290 0.1163407499 - - aldo/keto reductase, putative [Ricinus communis]
11 Hb_000291_180 0.1163741708 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
12 Hb_001022_030 0.116884993 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
13 Hb_160271_010 0.1173455573 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
14 Hb_006787_090 0.1193563785 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
15 Hb_001430_020 0.1195303784 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
16 Hb_009847_030 0.1196185698 - - zinc finger family protein [Populus trichocarpa]
17 Hb_163950_070 0.1199171932 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
18 Hb_000802_130 0.1222186753 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
19 Hb_002150_140 0.1231221993 - - PREDICTED: girdin-like [Jatropha curcas]
20 Hb_000181_060 0.1232171217 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004586_430 Hb_004586_430 Hb_001195_270 Hb_001195_270 Hb_004586_430--Hb_001195_270 Hb_000920_010 Hb_000920_010 Hb_004586_430--Hb_000920_010 Hb_003752_070 Hb_003752_070 Hb_004586_430--Hb_003752_070 Hb_156850_100 Hb_156850_100 Hb_004586_430--Hb_156850_100 Hb_011310_140 Hb_011310_140 Hb_004586_430--Hb_011310_140 Hb_003883_010 Hb_003883_010 Hb_004586_430--Hb_003883_010 Hb_001195_270--Hb_003752_070 Hb_000663_020 Hb_000663_020 Hb_001195_270--Hb_000663_020 Hb_021650_010 Hb_021650_010 Hb_001195_270--Hb_021650_010 Hb_005731_110 Hb_005731_110 Hb_001195_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_001195_270--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_001195_270--Hb_000051_060 Hb_160256_010 Hb_160256_010 Hb_000920_010--Hb_160256_010 Hb_000108_050 Hb_000108_050 Hb_000920_010--Hb_000108_050 Hb_000920_010--Hb_156850_100 Hb_160271_010 Hb_160271_010 Hb_000920_010--Hb_160271_010 Hb_022693_130 Hb_022693_130 Hb_000920_010--Hb_022693_130 Hb_003752_070--Hb_021650_010 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_003752_070--Hb_005162_110 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_000976_190 Hb_000976_190 Hb_011310_140--Hb_000976_190 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_000194_010 Hb_000194_010 Hb_011310_140--Hb_000194_010 Hb_011310_140--Hb_021650_010 Hb_002107_050 Hb_002107_050 Hb_003883_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_005235_070 Hb_005235_070 Hb_003883_010--Hb_005235_070 Hb_002218_020 Hb_002218_020 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0823 14.6001 65.8912 35.229 17.5485 19.135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6117 20.9356 14.3085 5.20608 58.2306

CAGE analysis