Hb_063912_010

Information

Type -
Description -
Location Contig63912: 1790-2494
Sequence    

Annotation

kegg
ID mus:103986917
description elongation factor 1-alpha-like
nr
ID XP_011656130.1
description PREDICTED: elongation factor 1-alpha-like, partial [Cucumis sativus]
swissprot
ID Q03033
description Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1
trembl
ID I7DFU2
description Putative elongation factor 1-alpha (Fragment) OS=Aralia elata PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063912_010 0.0 - - PREDICTED: elongation factor 1-alpha-like, partial [Cucumis sativus]
2 Hb_176022_010 0.2380170504 - - -
3 Hb_000922_130 0.2471346024 - - hypothetical protein POPTR_0008s04925g [Populus trichocarpa]
4 Hb_130788_010 0.2947079492 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
5 Hb_002490_050 0.2951624257 - - Os02g0182500, partial [Oryza sativa Japonica Group]
6 Hb_001195_390 0.305573763 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
7 Hb_005671_030 0.3087352759 - - -
8 Hb_002243_040 0.3090777812 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
9 Hb_005914_240 0.326149926 - - PREDICTED: oxidation resistance protein 1 [Jatropha curcas]
10 Hb_000002_320 0.330568949 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
11 Hb_002307_070 0.3331615946 - - hypothetical protein JCGZ_14841 [Jatropha curcas]
12 Hb_008891_020 0.3371770928 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
13 Hb_056305_010 0.3371785351 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_002257_070 0.3371848768 - - hypothetical protein, partial [Pseudomonas fluorescens]
15 Hb_003017_010 0.3372047232 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
16 Hb_003985_020 0.3372728677 - - -
17 Hb_012587_010 0.3374065731 - - -
18 Hb_066620_010 0.3377837546 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
19 Hb_044767_010 0.3379644201 - - -
20 Hb_001887_030 0.338178484 - - -

Gene co-expression network

sample Hb_063912_010 Hb_063912_010 Hb_176022_010 Hb_176022_010 Hb_063912_010--Hb_176022_010 Hb_000922_130 Hb_000922_130 Hb_063912_010--Hb_000922_130 Hb_130788_010 Hb_130788_010 Hb_063912_010--Hb_130788_010 Hb_002490_050 Hb_002490_050 Hb_063912_010--Hb_002490_050 Hb_001195_390 Hb_001195_390 Hb_063912_010--Hb_001195_390 Hb_005671_030 Hb_005671_030 Hb_063912_010--Hb_005671_030 Hb_176022_010--Hb_002490_050 Hb_011360_100 Hb_011360_100 Hb_176022_010--Hb_011360_100 Hb_059069_010 Hb_059069_010 Hb_176022_010--Hb_059069_010 Hb_038675_010 Hb_038675_010 Hb_176022_010--Hb_038675_010 Hb_004458_050 Hb_004458_050 Hb_176022_010--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_176022_010--Hb_005741_010 Hb_005723_040 Hb_005723_040 Hb_000922_130--Hb_005723_040 Hb_000922_130--Hb_001195_390 Hb_046440_010 Hb_046440_010 Hb_000922_130--Hb_046440_010 Hb_000939_010 Hb_000939_010 Hb_000922_130--Hb_000939_010 Hb_002243_040 Hb_002243_040 Hb_000922_130--Hb_002243_040 Hb_130788_010--Hb_002243_040 Hb_013925_010 Hb_013925_010 Hb_130788_010--Hb_013925_010 Hb_003752_050 Hb_003752_050 Hb_130788_010--Hb_003752_050 Hb_019654_080 Hb_019654_080 Hb_130788_010--Hb_019654_080 Hb_005470_010 Hb_005470_010 Hb_130788_010--Hb_005470_010 Hb_000160_200 Hb_000160_200 Hb_130788_010--Hb_000160_200 Hb_002490_050--Hb_038675_010 Hb_002490_050--Hb_059069_010 Hb_000195_050 Hb_000195_050 Hb_002490_050--Hb_000195_050 Hb_002490_050--Hb_011360_100 Hb_009265_020 Hb_009265_020 Hb_002490_050--Hb_009265_020 Hb_001195_390--Hb_002243_040 Hb_001195_390--Hb_013925_010 Hb_006344_010 Hb_006344_010 Hb_001195_390--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_001195_390--Hb_140572_010 Hb_001195_390--Hb_046440_010 Hb_001195_390--Hb_000160_200 Hb_187661_010 Hb_187661_010 Hb_005671_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_005671_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_005671_030--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_005671_030--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_005671_030--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_005671_030--Hb_003985_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286636 0 0.0278391 0 0 0.242573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.112464 0 0

CAGE analysis