Hb_116681_010

Information

Type -
Description -
Location Contig116681: 74-1168
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025968mg
description hypothetical protein
nr
ID XP_007219725.1
description hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116681_010 0.0 - - hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
2 Hb_013925_010 0.1802468091 - - RecName: Full=Pro-hevein; AltName: Full=Major hevein; Contains: RecName: Full=Hevein; AltName: Allergen=Hev b 6; Contains: RecName: Full=Win-like protein; Flags: Precursor [Hevea brasiliensis]
3 Hb_001425_120 0.2375813981 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
4 Hb_000160_200 0.2504339236 - - PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
5 Hb_000035_130 0.2587615207 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
6 Hb_102465_010 0.2609958922 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
7 Hb_001095_060 0.2649334815 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
8 Hb_166548_010 0.2658147606 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
9 Hb_068946_010 0.2693164453 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
10 Hb_002626_020 0.2708289399 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
11 Hb_004735_010 0.2747014891 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
12 Hb_007753_020 0.2796384287 - - -
13 Hb_006198_050 0.2807547773 - - protein with unknown function [Ricinus communis]
14 Hb_000270_420 0.281363913 - - actin binding protein, putative [Ricinus communis]
15 Hb_002301_020 0.2814937447 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
16 Hb_004072_010 0.2815582297 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
17 Hb_072912_010 0.2817076422 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_002307_050 0.2824473206 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
19 Hb_000082_080 0.2838348016 - - putative polyol transporter protein 1 [Hevea brasiliensis]
20 Hb_002671_080 0.2840268456 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_116681_010 Hb_116681_010 Hb_013925_010 Hb_013925_010 Hb_116681_010--Hb_013925_010 Hb_001425_120 Hb_001425_120 Hb_116681_010--Hb_001425_120 Hb_000160_200 Hb_000160_200 Hb_116681_010--Hb_000160_200 Hb_000035_130 Hb_000035_130 Hb_116681_010--Hb_000035_130 Hb_102465_010 Hb_102465_010 Hb_116681_010--Hb_102465_010 Hb_001095_060 Hb_001095_060 Hb_116681_010--Hb_001095_060 Hb_001195_390 Hb_001195_390 Hb_013925_010--Hb_001195_390 Hb_013925_010--Hb_001425_120 Hb_130788_010 Hb_130788_010 Hb_013925_010--Hb_130788_010 Hb_002243_040 Hb_002243_040 Hb_013925_010--Hb_002243_040 Hb_007753_020 Hb_007753_020 Hb_013925_010--Hb_007753_020 Hb_002301_020 Hb_002301_020 Hb_001425_120--Hb_002301_020 Hb_000548_040 Hb_000548_040 Hb_001425_120--Hb_000548_040 Hb_004545_150 Hb_004545_150 Hb_001425_120--Hb_004545_150 Hb_000270_420 Hb_000270_420 Hb_001425_120--Hb_000270_420 Hb_007810_060 Hb_007810_060 Hb_001425_120--Hb_007810_060 Hb_000571_070 Hb_000571_070 Hb_001425_120--Hb_000571_070 Hb_114261_010 Hb_114261_010 Hb_000160_200--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_000160_200--Hb_000270_500 Hb_000160_200--Hb_002243_040 Hb_000061_040 Hb_000061_040 Hb_000160_200--Hb_000061_040 Hb_004032_080 Hb_004032_080 Hb_000160_200--Hb_004032_080 Hb_073339_010 Hb_073339_010 Hb_000035_130--Hb_073339_010 Hb_006723_020 Hb_006723_020 Hb_000035_130--Hb_006723_020 Hb_143947_010 Hb_143947_010 Hb_000035_130--Hb_143947_010 Hb_000035_120 Hb_000035_120 Hb_000035_130--Hb_000035_120 Hb_000538_080 Hb_000538_080 Hb_000035_130--Hb_000538_080 Hb_000878_130 Hb_000878_130 Hb_000035_130--Hb_000878_130 Hb_001587_190 Hb_001587_190 Hb_102465_010--Hb_001587_190 Hb_000709_060 Hb_000709_060 Hb_102465_010--Hb_000709_060 Hb_000699_020 Hb_000699_020 Hb_102465_010--Hb_000699_020 Hb_101334_010 Hb_101334_010 Hb_102465_010--Hb_101334_010 Hb_000788_120 Hb_000788_120 Hb_102465_010--Hb_000788_120 Hb_000510_100 Hb_000510_100 Hb_102465_010--Hb_000510_100 Hb_121236_010 Hb_121236_010 Hb_001095_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_001095_060--Hb_115919_010 Hb_027445_060 Hb_027445_060 Hb_001095_060--Hb_027445_060 Hb_068946_010 Hb_068946_010 Hb_001095_060--Hb_068946_010 Hb_061581_010 Hb_061581_010 Hb_001095_060--Hb_061581_010 Hb_001488_110 Hb_001488_110 Hb_001095_060--Hb_001488_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.569389 0.0354651 0 0.034877 0 0.7792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292403 0.153321 0.282781 0.0924169 0

CAGE analysis