Hb_101334_010

Information

Type -
Description -
Location Contig101334: 2351-2925
Sequence    

Annotation

kegg
ID rcu:RCOM_0911090
description hypothetical protein
nr
ID XP_012069699.1
description PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RTK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00675: 3778-15016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101334_010 0.0 - - PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
2 Hb_000184_040 0.174817984 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
3 Hb_001373_150 0.1916879675 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
4 Hb_001047_010 0.1957345823 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002471_070 0.2000638647 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
6 Hb_056196_070 0.2032551083 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
7 Hb_048141_010 0.2040432528 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
8 Hb_005396_040 0.204582703 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_124315_040 0.2056874111 - - hypothetical protein 19 [Hevea brasiliensis]
10 Hb_000510_100 0.208223377 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_006070_010 0.2085419785 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
12 Hb_000699_020 0.2086339941 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
13 Hb_003207_110 0.2087042778 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
14 Hb_002805_290 0.2104472114 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
15 Hb_002235_400 0.210836195 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
16 Hb_001631_070 0.2111242585 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000082_080 0.2112656816 - - putative polyol transporter protein 1 [Hevea brasiliensis]
18 Hb_003050_230 0.211269896 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000762_020 0.211437687 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
20 Hb_000481_020 0.2124183893 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_101334_010 Hb_101334_010 Hb_000184_040 Hb_000184_040 Hb_101334_010--Hb_000184_040 Hb_001373_150 Hb_001373_150 Hb_101334_010--Hb_001373_150 Hb_001047_010 Hb_001047_010 Hb_101334_010--Hb_001047_010 Hb_002471_070 Hb_002471_070 Hb_101334_010--Hb_002471_070 Hb_056196_070 Hb_056196_070 Hb_101334_010--Hb_056196_070 Hb_048141_010 Hb_048141_010 Hb_101334_010--Hb_048141_010 Hb_000184_040--Hb_001047_010 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_030565_130 Hb_030565_130 Hb_001373_150--Hb_030565_130 Hb_002301_290 Hb_002301_290 Hb_001373_150--Hb_002301_290 Hb_008554_020 Hb_008554_020 Hb_001373_150--Hb_008554_020 Hb_001373_150--Hb_002235_400 Hb_001373_150--Hb_000184_040 Hb_006501_110 Hb_006501_110 Hb_001373_150--Hb_006501_110 Hb_003086_110 Hb_003086_110 Hb_001047_010--Hb_003086_110 Hb_118977_020 Hb_118977_020 Hb_001047_010--Hb_118977_020 Hb_007166_050 Hb_007166_050 Hb_001047_010--Hb_007166_050 Hb_000272_100 Hb_000272_100 Hb_001047_010--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_001047_010--Hb_001437_040 Hb_003207_110 Hb_003207_110 Hb_002471_070--Hb_003207_110 Hb_005396_040 Hb_005396_040 Hb_002471_070--Hb_005396_040 Hb_000920_150 Hb_000920_150 Hb_002471_070--Hb_000920_150 Hb_002876_030 Hb_002876_030 Hb_002471_070--Hb_002876_030 Hb_023214_010 Hb_023214_010 Hb_002471_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_002471_070--Hb_001035_040 Hb_005565_030 Hb_005565_030 Hb_056196_070--Hb_005565_030 Hb_009158_030 Hb_009158_030 Hb_056196_070--Hb_009158_030 Hb_056196_070--Hb_001047_010 Hb_056196_070--Hb_000184_040 Hb_156144_010 Hb_156144_010 Hb_056196_070--Hb_156144_010 Hb_001832_160 Hb_001832_160 Hb_056196_070--Hb_001832_160 Hb_008847_010 Hb_008847_010 Hb_048141_010--Hb_008847_010 Hb_003540_230 Hb_003540_230 Hb_048141_010--Hb_003540_230 Hb_010578_090 Hb_010578_090 Hb_048141_010--Hb_010578_090 Hb_004787_090 Hb_004787_090 Hb_048141_010--Hb_004787_090 Hb_005016_130 Hb_005016_130 Hb_048141_010--Hb_005016_130 Hb_001631_080 Hb_001631_080 Hb_048141_010--Hb_001631_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466831 0.0528721 0 0.177765 0.0516761 0.315859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.59828 0.188034 0.16148 0.0776956 0

CAGE analysis