Hb_056196_070

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig56196: 43624-47606
Sequence    

Annotation

kegg
ID rcu:RCOM_1488790
description Auxin-responsive protein IAA6, putative
nr
ID XP_012069076.1
description PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
swissprot
ID Q8LAL2
description Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2
trembl
ID A0A067L8N0
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_24854 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48855: 43651-47451 , PASA_asmbl_48856: 43651-47451 , PASA_asmbl_48857: 43651-47451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056196_070 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
2 Hb_005565_030 0.1606015835 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
3 Hb_009158_030 0.173864555 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
4 Hb_001047_010 0.1841844983 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000184_040 0.1970465313 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
6 Hb_156144_010 0.2024143113 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
7 Hb_001832_160 0.2029820087 - - conserved hypothetical protein [Ricinus communis]
8 Hb_101334_010 0.2032551083 - - PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
9 Hb_000613_200 0.2039505482 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
10 Hb_002301_240 0.2042156043 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
11 Hb_003398_060 0.2068044729 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_005271_170 0.2071834614 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
13 Hb_084934_010 0.2106312082 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
14 Hb_000996_170 0.2113943475 - - unknown [Glycine max]
15 Hb_002263_010 0.2115894804 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
16 Hb_000162_170 0.2116527962 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
17 Hb_004055_010 0.2116768991 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_000510_100 0.2117207928 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_002660_140 0.213004408 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
20 Hb_001864_030 0.213787879 - - thioredoxin h [Hevea brasiliensis]

Gene co-expression network

sample Hb_056196_070 Hb_056196_070 Hb_005565_030 Hb_005565_030 Hb_056196_070--Hb_005565_030 Hb_009158_030 Hb_009158_030 Hb_056196_070--Hb_009158_030 Hb_001047_010 Hb_001047_010 Hb_056196_070--Hb_001047_010 Hb_000184_040 Hb_000184_040 Hb_056196_070--Hb_000184_040 Hb_156144_010 Hb_156144_010 Hb_056196_070--Hb_156144_010 Hb_001832_160 Hb_001832_160 Hb_056196_070--Hb_001832_160 Hb_001818_080 Hb_001818_080 Hb_005565_030--Hb_001818_080 Hb_005565_030--Hb_009158_030 Hb_030312_040 Hb_030312_040 Hb_005565_030--Hb_030312_040 Hb_002111_030 Hb_002111_030 Hb_005565_030--Hb_002111_030 Hb_002263_010 Hb_002263_010 Hb_005565_030--Hb_002263_010 Hb_015941_030 Hb_015941_030 Hb_005565_030--Hb_015941_030 Hb_005056_060 Hb_005056_060 Hb_009158_030--Hb_005056_060 Hb_002232_170 Hb_002232_170 Hb_009158_030--Hb_002232_170 Hb_000395_080 Hb_000395_080 Hb_009158_030--Hb_000395_080 Hb_004221_010 Hb_004221_010 Hb_009158_030--Hb_004221_010 Hb_004310_030 Hb_004310_030 Hb_009158_030--Hb_004310_030 Hb_001047_010--Hb_000184_040 Hb_003086_110 Hb_003086_110 Hb_001047_010--Hb_003086_110 Hb_118977_020 Hb_118977_020 Hb_001047_010--Hb_118977_020 Hb_007166_050 Hb_007166_050 Hb_001047_010--Hb_007166_050 Hb_000272_100 Hb_000272_100 Hb_001047_010--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_001047_010--Hb_001437_040 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_156144_010--Hb_001832_160 Hb_086063_010 Hb_086063_010 Hb_156144_010--Hb_086063_010 Hb_002475_160 Hb_002475_160 Hb_156144_010--Hb_002475_160 Hb_009838_130 Hb_009838_130 Hb_156144_010--Hb_009838_130 Hb_002626_040 Hb_002626_040 Hb_156144_010--Hb_002626_040 Hb_031091_010 Hb_031091_010 Hb_156144_010--Hb_031091_010 Hb_001832_160--Hb_002111_030 Hb_001832_160--Hb_005565_030 Hb_187739_020 Hb_187739_020 Hb_001832_160--Hb_187739_020 Hb_001832_160--Hb_002475_160 Hb_002411_180 Hb_002411_180 Hb_001832_160--Hb_002411_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.142 76.9748 4.07771 66.9124 80.5739 159.132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
301.129 57.8001 29.2153 29.6439 1.03498

CAGE analysis