Hb_001832_160

Information

Type -
Description -
Location Contig1832: 153556-155235
Sequence    

Annotation

kegg
ID rcu:RCOM_1046920
description hypothetical protein
nr
ID XP_002514111.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SU79
description Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1
trembl
ID B9RK67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046920 PE=4 SV=1
Gene Ontology
ID GO:0016491
description probable polyamine oxidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17901: 153493-153643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_156144_010 0.1022891615 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
3 Hb_002111_030 0.1375251731 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
4 Hb_005565_030 0.1465738201 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
5 Hb_187739_020 0.1486819135 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_002475_160 0.1498312026 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
7 Hb_002411_180 0.150542142 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
8 Hb_002253_040 0.1506304942 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
9 Hb_000866_030 0.1507332367 - - hypothetical protein RCOM_1615820 [Ricinus communis]
10 Hb_001976_090 0.1522536452 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
11 Hb_033153_020 0.1534729054 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
12 Hb_009838_130 0.1550248254 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
13 Hb_086063_010 0.1576817054 - - soluble diacylglycerol acyltransferase [Ricinus communis]
14 Hb_002942_160 0.1611036693 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
15 Hb_002716_140 0.1612670815 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_001158_220 0.1629716242 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
17 Hb_001380_020 0.1639532356 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
18 Hb_031091_010 0.1641639459 - - crooked neck protein, putative [Ricinus communis]
19 Hb_000920_040 0.164404615 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
20 Hb_058381_010 0.1650535834 - - hypothetical protein JCGZ_13280 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_160 Hb_001832_160 Hb_156144_010 Hb_156144_010 Hb_001832_160--Hb_156144_010 Hb_002111_030 Hb_002111_030 Hb_001832_160--Hb_002111_030 Hb_005565_030 Hb_005565_030 Hb_001832_160--Hb_005565_030 Hb_187739_020 Hb_187739_020 Hb_001832_160--Hb_187739_020 Hb_002475_160 Hb_002475_160 Hb_001832_160--Hb_002475_160 Hb_002411_180 Hb_002411_180 Hb_001832_160--Hb_002411_180 Hb_086063_010 Hb_086063_010 Hb_156144_010--Hb_086063_010 Hb_156144_010--Hb_002475_160 Hb_009838_130 Hb_009838_130 Hb_156144_010--Hb_009838_130 Hb_002626_040 Hb_002626_040 Hb_156144_010--Hb_002626_040 Hb_031091_010 Hb_031091_010 Hb_156144_010--Hb_031091_010 Hb_002111_030--Hb_002475_160 Hb_000300_280 Hb_000300_280 Hb_002111_030--Hb_000300_280 Hb_026099_010 Hb_026099_010 Hb_002111_030--Hb_026099_010 Hb_000645_150 Hb_000645_150 Hb_002111_030--Hb_000645_150 Hb_002942_160 Hb_002942_160 Hb_002111_030--Hb_002942_160 Hb_007317_190 Hb_007317_190 Hb_002111_030--Hb_007317_190 Hb_001818_080 Hb_001818_080 Hb_005565_030--Hb_001818_080 Hb_009158_030 Hb_009158_030 Hb_005565_030--Hb_009158_030 Hb_030312_040 Hb_030312_040 Hb_005565_030--Hb_030312_040 Hb_005565_030--Hb_002111_030 Hb_002263_010 Hb_002263_010 Hb_005565_030--Hb_002263_010 Hb_015941_030 Hb_015941_030 Hb_005565_030--Hb_015941_030 Hb_000866_030 Hb_000866_030 Hb_187739_020--Hb_000866_030 Hb_002982_040 Hb_002982_040 Hb_187739_020--Hb_002982_040 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_008714_020 Hb_008714_020 Hb_187739_020--Hb_008714_020 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_007643_050 Hb_007643_050 Hb_002475_160--Hb_007643_050 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_001158_220 Hb_001158_220 Hb_002475_160--Hb_001158_220 Hb_002475_160--Hb_000645_150 Hb_011942_080 Hb_011942_080 Hb_002475_160--Hb_011942_080 Hb_002411_180--Hb_009838_130 Hb_001396_290 Hb_001396_290 Hb_002411_180--Hb_001396_290 Hb_008518_050 Hb_008518_050 Hb_002411_180--Hb_008518_050 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20726 4.75962 0.782237 3.58551 5.29359 10.3952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.68275 2.07242 0.651578 1.68648 1.36089

CAGE analysis