Hb_156144_010

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig156144: 16782-20338
Sequence    

Annotation

kegg
ID rcu:RCOM_0187630
description transcription factor, putative
nr
ID XP_012079519.1
description PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
swissprot
ID Q38827
description Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1
trembl
ID A0A067K7E1
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_12617 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13559: 16687-18908 , PASA_asmbl_13560: 19307-19792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156144_010 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
2 Hb_001832_160 0.1022891615 - - conserved hypothetical protein [Ricinus communis]
3 Hb_086063_010 0.1274826727 - - soluble diacylglycerol acyltransferase [Ricinus communis]
4 Hb_002475_160 0.1349663062 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
5 Hb_009838_130 0.1363881532 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
6 Hb_002626_040 0.1388225338 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
7 Hb_031091_010 0.1404940208 - - crooked neck protein, putative [Ricinus communis]
8 Hb_187739_020 0.1467987487 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_000032_620 0.1470190668 - - hypothetical protein RCOM_1311830 [Ricinus communis]
10 Hb_000798_060 0.1474056132 transcription factor TF Family: PHD -
11 Hb_017259_010 0.1481642549 - - -
12 Hb_058381_010 0.1490996413 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
13 Hb_032202_240 0.1526737023 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
14 Hb_002411_180 0.1531598964 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
15 Hb_178592_010 0.1538213026 - - PREDICTED: cyprosin-like [Jatropha curcas]
16 Hb_008695_120 0.1542465644 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
17 Hb_008518_050 0.1544396671 - - hypothetical protein F383_31148 [Gossypium arboreum]
18 Hb_001380_020 0.1549620944 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
19 Hb_001158_220 0.1551672639 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
20 Hb_000116_110 0.1554354916 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]

Gene co-expression network

sample Hb_156144_010 Hb_156144_010 Hb_001832_160 Hb_001832_160 Hb_156144_010--Hb_001832_160 Hb_086063_010 Hb_086063_010 Hb_156144_010--Hb_086063_010 Hb_002475_160 Hb_002475_160 Hb_156144_010--Hb_002475_160 Hb_009838_130 Hb_009838_130 Hb_156144_010--Hb_009838_130 Hb_002626_040 Hb_002626_040 Hb_156144_010--Hb_002626_040 Hb_031091_010 Hb_031091_010 Hb_156144_010--Hb_031091_010 Hb_002111_030 Hb_002111_030 Hb_001832_160--Hb_002111_030 Hb_005565_030 Hb_005565_030 Hb_001832_160--Hb_005565_030 Hb_187739_020 Hb_187739_020 Hb_001832_160--Hb_187739_020 Hb_001832_160--Hb_002475_160 Hb_002411_180 Hb_002411_180 Hb_001832_160--Hb_002411_180 Hb_164010_060 Hb_164010_060 Hb_086063_010--Hb_164010_060 Hb_086063_010--Hb_031091_010 Hb_033095_020 Hb_033095_020 Hb_086063_010--Hb_033095_020 Hb_000032_620 Hb_000032_620 Hb_086063_010--Hb_000032_620 Hb_000798_060 Hb_000798_060 Hb_086063_010--Hb_000798_060 Hb_001168_040 Hb_001168_040 Hb_086063_010--Hb_001168_040 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_007643_050 Hb_007643_050 Hb_002475_160--Hb_007643_050 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_001158_220 Hb_001158_220 Hb_002475_160--Hb_001158_220 Hb_000645_150 Hb_000645_150 Hb_002475_160--Hb_000645_150 Hb_011942_080 Hb_011942_080 Hb_002475_160--Hb_011942_080 Hb_017259_010 Hb_017259_010 Hb_009838_130--Hb_017259_010 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_000529_080 Hb_000529_080 Hb_009838_130--Hb_000529_080 Hb_009838_130--Hb_007643_050 Hb_003906_190 Hb_003906_190 Hb_002626_040--Hb_003906_190 Hb_032202_240 Hb_032202_240 Hb_002626_040--Hb_032202_240 Hb_002477_150 Hb_002477_150 Hb_002626_040--Hb_002477_150 Hb_006316_070 Hb_006316_070 Hb_002626_040--Hb_006316_070 Hb_011465_030 Hb_011465_030 Hb_002626_040--Hb_011465_030 Hb_002977_010 Hb_002977_010 Hb_002626_040--Hb_002977_010 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_031091_010--Hb_007643_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3737 24.2731 6.8026 17.8053 28.1844 37.5351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4881 9.00197 5.22081 5.63405 3.01213

CAGE analysis