Hb_102465_010

Information

Type -
Description -
Location Contig102465: 15-864
Sequence    

Annotation

kegg
ID tcc:TCM_036595
description hypothetical protein
nr
ID XP_009770762.1
description PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061FJB0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_036595 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105631113

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102465_010 0.0 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
2 Hb_001587_190 0.1881431748 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
3 Hb_000709_060 0.2002307986 - - PREDICTED: abscisic-aldehyde oxidase-like isoform X5 [Populus euphratica]
4 Hb_000699_020 0.2254631898 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
5 Hb_101334_010 0.2372656575 - - PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
6 Hb_000788_120 0.2457097435 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
7 Hb_000510_100 0.2505260124 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_000085_270 0.2516010714 - - PREDICTED: pirin-like protein [Malus domestica]
9 Hb_000261_510 0.2569239961 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
10 Hb_000442_100 0.2570316863 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
11 Hb_000381_080 0.2585995065 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
12 Hb_116681_010 0.2609958922 - - hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
13 Hb_009158_030 0.2618735963 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
14 Hb_006829_040 0.2620682946 - - hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
15 Hb_025964_030 0.266775842 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
16 Hb_002471_170 0.2674375941 - - -
17 Hb_085659_010 0.268892441 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
18 Hb_001248_050 0.272526902 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
19 Hb_004070_030 0.2725390332 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_005565_030 0.272580558 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_102465_010 Hb_102465_010 Hb_001587_190 Hb_001587_190 Hb_102465_010--Hb_001587_190 Hb_000709_060 Hb_000709_060 Hb_102465_010--Hb_000709_060 Hb_000699_020 Hb_000699_020 Hb_102465_010--Hb_000699_020 Hb_101334_010 Hb_101334_010 Hb_102465_010--Hb_101334_010 Hb_000788_120 Hb_000788_120 Hb_102465_010--Hb_000788_120 Hb_000510_100 Hb_000510_100 Hb_102465_010--Hb_000510_100 Hb_001587_190--Hb_000709_060 Hb_004108_080 Hb_004108_080 Hb_001587_190--Hb_004108_080 Hb_005329_020 Hb_005329_020 Hb_001587_190--Hb_005329_020 Hb_001248_050 Hb_001248_050 Hb_001587_190--Hb_001248_050 Hb_000329_650 Hb_000329_650 Hb_001587_190--Hb_000329_650 Hb_009158_030 Hb_009158_030 Hb_001587_190--Hb_009158_030 Hb_000709_060--Hb_004108_080 Hb_003893_090 Hb_003893_090 Hb_000709_060--Hb_003893_090 Hb_089685_010 Hb_089685_010 Hb_000709_060--Hb_089685_010 Hb_000442_100 Hb_000442_100 Hb_000709_060--Hb_000442_100 Hb_003687_140 Hb_003687_140 Hb_000699_020--Hb_003687_140 Hb_003756_010 Hb_003756_010 Hb_000699_020--Hb_003756_010 Hb_000699_020--Hb_000510_100 Hb_002471_170 Hb_002471_170 Hb_000699_020--Hb_002471_170 Hb_000926_290 Hb_000926_290 Hb_000699_020--Hb_000926_290 Hb_000680_150 Hb_000680_150 Hb_000699_020--Hb_000680_150 Hb_000184_040 Hb_000184_040 Hb_101334_010--Hb_000184_040 Hb_001373_150 Hb_001373_150 Hb_101334_010--Hb_001373_150 Hb_001047_010 Hb_001047_010 Hb_101334_010--Hb_001047_010 Hb_002471_070 Hb_002471_070 Hb_101334_010--Hb_002471_070 Hb_056196_070 Hb_056196_070 Hb_101334_010--Hb_056196_070 Hb_048141_010 Hb_048141_010 Hb_101334_010--Hb_048141_010 Hb_003057_130 Hb_003057_130 Hb_000788_120--Hb_003057_130 Hb_012305_060 Hb_012305_060 Hb_000788_120--Hb_012305_060 Hb_000175_040 Hb_000175_040 Hb_000788_120--Hb_000175_040 Hb_027472_090 Hb_027472_090 Hb_000788_120--Hb_027472_090 Hb_025246_010 Hb_025246_010 Hb_000788_120--Hb_025246_010 Hb_001999_120 Hb_001999_120 Hb_000788_120--Hb_001999_120 Hb_019516_040 Hb_019516_040 Hb_000510_100--Hb_019516_040 Hb_000510_100--Hb_000184_040 Hb_000762_020 Hb_000762_020 Hb_000510_100--Hb_000762_020 Hb_000282_060 Hb_000282_060 Hb_000510_100--Hb_000282_060 Hb_004072_010 Hb_004072_010 Hb_000510_100--Hb_004072_010 Hb_000567_200 Hb_000567_200 Hb_000510_100--Hb_000567_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759841 0.16016 0 0.0490527 0 0.530243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.709405 0.30427 0.184029 0.102512 0.102139

CAGE analysis