Hb_114261_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig114261: 289-799
Sequence    

Annotation

kegg
ID rcu:RCOM_1471540
description NAC domain-containing protein 21/22, putative
nr
ID XP_012080293.1
description PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID R4N7I9
description NAC transcription factor 002 OS=Jatropha curcas GN=JCGZ_11649 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04318: 117-327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114261_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
2 Hb_003929_060 0.1932035333 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
3 Hb_000061_040 0.2041969631 - - PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
4 Hb_000160_200 0.2133273238 - - PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
5 Hb_001023_020 0.2477530657 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
6 Hb_001396_150 0.252959285 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
7 Hb_000270_500 0.2652276232 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
8 Hb_057746_010 0.2672682705 - - -
9 Hb_101040_010 0.270101996 - - -
10 Hb_138652_020 0.2702367103 - - -
11 Hb_004429_030 0.2773225482 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
12 Hb_080530_020 0.2774090489 - - -
13 Hb_000707_070 0.2863804221 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
14 Hb_000217_050 0.2917233291 - - elongation factor 1-alpha, putative [Ricinus communis]
15 Hb_005504_010 0.2961404593 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
16 Hb_037605_010 0.2970613188 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_074701_010 0.3031865783 - - -
18 Hb_000193_150 0.3045696244 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
19 Hb_003859_010 0.3048705244 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
20 Hb_007904_190 0.3076854617 - - -

Gene co-expression network

sample Hb_114261_010 Hb_114261_010 Hb_003929_060 Hb_003929_060 Hb_114261_010--Hb_003929_060 Hb_000061_040 Hb_000061_040 Hb_114261_010--Hb_000061_040 Hb_000160_200 Hb_000160_200 Hb_114261_010--Hb_000160_200 Hb_001023_020 Hb_001023_020 Hb_114261_010--Hb_001023_020 Hb_001396_150 Hb_001396_150 Hb_114261_010--Hb_001396_150 Hb_000270_500 Hb_000270_500 Hb_114261_010--Hb_000270_500 Hb_003929_060--Hb_000061_040 Hb_005389_110 Hb_005389_110 Hb_003929_060--Hb_005389_110 Hb_000828_040 Hb_000828_040 Hb_003929_060--Hb_000828_040 Hb_002235_140 Hb_002235_140 Hb_003929_060--Hb_002235_140 Hb_003929_060--Hb_000160_200 Hb_000061_040--Hb_000160_200 Hb_000061_040--Hb_000828_040 Hb_000861_030 Hb_000861_030 Hb_000061_040--Hb_000861_030 Hb_004883_060 Hb_004883_060 Hb_000061_040--Hb_004883_060 Hb_000160_200--Hb_000270_500 Hb_002243_040 Hb_002243_040 Hb_000160_200--Hb_002243_040 Hb_116681_010 Hb_116681_010 Hb_000160_200--Hb_116681_010 Hb_004032_080 Hb_004032_080 Hb_000160_200--Hb_004032_080 Hb_057746_010 Hb_057746_010 Hb_001023_020--Hb_057746_010 Hb_000002_320 Hb_000002_320 Hb_001023_020--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_001023_020--Hb_034667_020 Hb_007827_020 Hb_007827_020 Hb_001023_020--Hb_007827_020 Hb_001023_020--Hb_000270_500 Hb_157846_010 Hb_157846_010 Hb_001396_150--Hb_157846_010 Hb_001396_150--Hb_002235_140 Hb_000217_060 Hb_000217_060 Hb_001396_150--Hb_000217_060 Hb_000375_370 Hb_000375_370 Hb_001396_150--Hb_000375_370 Hb_049160_010 Hb_049160_010 Hb_001396_150--Hb_049160_010 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_094647_010 Hb_094647_010 Hb_000270_500--Hb_094647_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150 Hb_000270_500--Hb_007827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
153.178 28.9879 0.533346 6.96195 6.60604 222.66
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3257 14.0224 1.85044 45.5885 0.580054

CAGE analysis