Hb_000217_060

Information

Type -
Description -
Location Contig217: 193422-196680
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000217_060 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_157846_010 0.2175913972 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
3 Hb_001396_150 0.220843519 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
4 Hb_049160_010 0.2642960701 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_084858_010 0.2681871458 - - Uncharacterized protein isoform 3 [Theobroma cacao]
6 Hb_007846_040 0.2695076678 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
7 Hb_134894_010 0.2719828247 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
8 Hb_111834_020 0.293474616 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
9 Hb_002235_140 0.2963844729 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003929_060 0.2982067962 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
11 Hb_000123_020 0.3005825173 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
12 Hb_063433_010 0.3069366418 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
13 Hb_000640_150 0.3152841346 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
14 Hb_009848_040 0.3155665149 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
15 Hb_000733_270 0.3223963851 - - PREDICTED: serine/threonine-protein phosphatase PP1-alpha catalytic subunit [Dasypus novemcinctus]
16 Hb_000270_210 0.3236096723 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
17 Hb_000649_010 0.3241556284 - - PREDICTED: adagio protein 3 [Jatropha curcas]
18 Hb_005715_020 0.3245967319 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
19 Hb_002273_060 0.3247924952 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009848_030 0.3251212608 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000217_060 Hb_000217_060 Hb_157846_010 Hb_157846_010 Hb_000217_060--Hb_157846_010 Hb_001396_150 Hb_001396_150 Hb_000217_060--Hb_001396_150 Hb_049160_010 Hb_049160_010 Hb_000217_060--Hb_049160_010 Hb_084858_010 Hb_084858_010 Hb_000217_060--Hb_084858_010 Hb_007846_040 Hb_007846_040 Hb_000217_060--Hb_007846_040 Hb_134894_010 Hb_134894_010 Hb_000217_060--Hb_134894_010 Hb_157846_010--Hb_049160_010 Hb_157846_010--Hb_001396_150 Hb_000649_010 Hb_000649_010 Hb_157846_010--Hb_000649_010 Hb_004883_060 Hb_004883_060 Hb_157846_010--Hb_004883_060 Hb_063480_020 Hb_063480_020 Hb_157846_010--Hb_063480_020 Hb_002235_140 Hb_002235_140 Hb_001396_150--Hb_002235_140 Hb_000375_370 Hb_000375_370 Hb_001396_150--Hb_000375_370 Hb_001396_150--Hb_049160_010 Hb_114261_010 Hb_114261_010 Hb_001396_150--Hb_114261_010 Hb_049160_010--Hb_063480_020 Hb_000497_010 Hb_000497_010 Hb_049160_010--Hb_000497_010 Hb_141918_010 Hb_141918_010 Hb_049160_010--Hb_141918_010 Hb_001907_100 Hb_001907_100 Hb_049160_010--Hb_001907_100 Hb_010727_010 Hb_010727_010 Hb_049160_010--Hb_010727_010 Hb_000724_030 Hb_000724_030 Hb_084858_010--Hb_000724_030 Hb_000062_060 Hb_000062_060 Hb_084858_010--Hb_000062_060 Hb_002232_150 Hb_002232_150 Hb_084858_010--Hb_002232_150 Hb_084858_010--Hb_007846_040 Hb_004724_120 Hb_004724_120 Hb_084858_010--Hb_004724_120 Hb_000270_210 Hb_000270_210 Hb_084858_010--Hb_000270_210 Hb_000640_150 Hb_000640_150 Hb_007846_040--Hb_000640_150 Hb_000003_390 Hb_000003_390 Hb_007846_040--Hb_000003_390 Hb_007846_040--Hb_001907_100 Hb_007846_040--Hb_002232_150 Hb_054885_020 Hb_054885_020 Hb_007846_040--Hb_054885_020 Hb_059641_010 Hb_059641_010 Hb_007846_040--Hb_059641_010 Hb_006586_030 Hb_006586_030 Hb_134894_010--Hb_006586_030 Hb_001524_090 Hb_001524_090 Hb_134894_010--Hb_001524_090 Hb_027445_050 Hb_027445_050 Hb_134894_010--Hb_027445_050 Hb_001989_020 Hb_001989_020 Hb_134894_010--Hb_001989_020 Hb_000283_150 Hb_000283_150 Hb_134894_010--Hb_000283_150 Hb_009848_040 Hb_009848_040 Hb_134894_010--Hb_009848_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.640079 0.839934 0.161562 0.068588 0 1.45004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0960867 0.0377874 0 1.01711 0.0775361

CAGE analysis