Hb_000640_150

Information

Type transcription factor
Description TF Family: WRKY
Location Contig640: 117797-119580
Sequence    

Annotation

kegg
ID rcu:RCOM_1346980
description hypothetical protein
nr
ID XP_002515275.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LP56
description Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1
trembl
ID B9RND6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346980 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 69

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52094: 117927-119637 , PASA_asmbl_52095: 117820-118435 , PASA_asmbl_52096: 110960-118716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_150 0.0 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
2 Hb_012404_040 0.1748534727 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
3 Hb_000270_210 0.1923963084 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
4 Hb_000003_390 0.1951995489 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
5 Hb_007846_040 0.1953172191 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
6 Hb_010261_010 0.2023656442 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
7 Hb_003157_010 0.205714009 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_003096_040 0.2114858512 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
9 Hb_143960_010 0.2116824071 - - -
10 Hb_000521_170 0.2126661271 - - PREDICTED: callose synthase 1 [Jatropha curcas]
11 Hb_000315_030 0.2127323258 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_009848_030 0.214591923 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
13 Hb_002232_150 0.2147377732 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
14 Hb_001989_020 0.2156223288 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
15 Hb_000032_310 0.2157056747 - - ring finger protein, putative [Ricinus communis]
16 Hb_005144_030 0.2163727678 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
17 Hb_001351_040 0.2209374079 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
18 Hb_031527_070 0.2238166789 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
19 Hb_000997_410 0.2255062535 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
20 Hb_164458_010 0.227717803 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_150 Hb_000640_150 Hb_012404_040 Hb_012404_040 Hb_000640_150--Hb_012404_040 Hb_000270_210 Hb_000270_210 Hb_000640_150--Hb_000270_210 Hb_000003_390 Hb_000003_390 Hb_000640_150--Hb_000003_390 Hb_007846_040 Hb_007846_040 Hb_000640_150--Hb_007846_040 Hb_010261_010 Hb_010261_010 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010 Hb_012404_040--Hb_010261_010 Hb_001269_040 Hb_001269_040 Hb_012404_040--Hb_001269_040 Hb_001351_040 Hb_001351_040 Hb_012404_040--Hb_001351_040 Hb_009848_030 Hb_009848_030 Hb_012404_040--Hb_009848_030 Hb_015388_030 Hb_015388_030 Hb_012404_040--Hb_015388_030 Hb_005389_110 Hb_005389_110 Hb_000270_210--Hb_005389_110 Hb_018344_010 Hb_018344_010 Hb_000270_210--Hb_018344_010 Hb_002232_150 Hb_002232_150 Hb_000270_210--Hb_002232_150 Hb_116125_010 Hb_116125_010 Hb_000270_210--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000270_210--Hb_002735_040 Hb_007257_050 Hb_007257_050 Hb_000003_390--Hb_007257_050 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_007846_040--Hb_000003_390 Hb_001907_100 Hb_001907_100 Hb_007846_040--Hb_001907_100 Hb_007846_040--Hb_002232_150 Hb_054885_020 Hb_054885_020 Hb_007846_040--Hb_054885_020 Hb_059641_010 Hb_059641_010 Hb_007846_040--Hb_059641_010 Hb_003096_040 Hb_003096_040 Hb_010261_010--Hb_003096_040 Hb_003633_140 Hb_003633_140 Hb_010261_010--Hb_003633_140 Hb_003525_020 Hb_003525_020 Hb_010261_010--Hb_003525_020 Hb_000538_190 Hb_000538_190 Hb_010261_010--Hb_000538_190 Hb_010261_010--Hb_001269_040 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_003157_010--Hb_006501_020 Hb_000808_070 Hb_000808_070 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4126 26.0532 3.15422 6.43643 15.1705 22.8056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.421842 0.127642 0.287401 21.8981 3.03986

CAGE analysis