Hb_001907_100

Information

Type -
Description -
Location Contig1907: 173687-205340
Sequence    

Annotation

kegg
ID vvi:100254846
description putative disease resistance protein At3g14460
nr
ID XP_010645657.1
description PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A5ARX3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19021: 173164-173722 , PASA_asmbl_19022: 185239-185486 , PASA_asmbl_19023: 186777-186892 , PASA_asmbl_19025: 190301-191266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_100 0.0 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
2 Hb_002316_050 0.144544271 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003155_020 0.1485428922 - - Rpp4C3 [Medicago truncatula]
4 Hb_010831_020 0.1499620914 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_000808_070 0.1521356507 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
6 Hb_181975_010 0.154254267 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
7 Hb_007257_050 0.1543269233 - - protein with unknown function [Ricinus communis]
8 Hb_000540_120 0.1556049456 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
9 Hb_012226_010 0.1561127057 - - PREDICTED: protein DGCR14 [Jatropha curcas]
10 Hb_000932_070 0.1642480902 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
11 Hb_000003_390 0.1678384039 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
12 Hb_001301_230 0.169360947 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
13 Hb_001638_040 0.169728886 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
14 Hb_000175_500 0.171449765 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
15 Hb_002173_020 0.1728676582 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
16 Hb_002837_110 0.1743683517 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
17 Hb_006683_040 0.1748041668 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_011465_030 0.1749190399 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_003125_030 0.1755208536 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_006185_020 0.1766675918 - - PREDICTED: midasin [Jatropha curcas]

Gene co-expression network

sample Hb_001907_100 Hb_001907_100 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_003155_020 Hb_003155_020 Hb_001907_100--Hb_003155_020 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_181975_010 Hb_181975_010 Hb_001907_100--Hb_181975_010 Hb_007257_050 Hb_007257_050 Hb_001907_100--Hb_007257_050 Hb_001638_040 Hb_001638_040 Hb_002316_050--Hb_001638_040 Hb_000265_250 Hb_000265_250 Hb_002316_050--Hb_000265_250 Hb_003633_140 Hb_003633_140 Hb_002316_050--Hb_003633_140 Hb_002316_050--Hb_000808_070 Hb_018133_030 Hb_018133_030 Hb_002316_050--Hb_018133_030 Hb_000540_120 Hb_000540_120 Hb_002316_050--Hb_000540_120 Hb_009897_010 Hb_009897_010 Hb_003155_020--Hb_009897_010 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_005203_020 Hb_005203_020 Hb_003155_020--Hb_005203_020 Hb_001865_060 Hb_001865_060 Hb_003155_020--Hb_001865_060 Hb_011716_110 Hb_011716_110 Hb_003155_020--Hb_011716_110 Hb_010831_020--Hb_001638_040 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_003157_010 Hb_003157_010 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_000808_070--Hb_018133_030 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_181975_010--Hb_007257_050 Hb_000003_390 Hb_000003_390 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_007978_020 Hb_007978_020 Hb_181975_010--Hb_007978_020 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_007257_050--Hb_003157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.99937 2.40305 0.280696 0.458014 0.466794 1.3827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.282033 0.195054 0.116552 0.508383 0.158982

CAGE analysis