Hb_003155_020

Information

Type -
Description -
Location Contig3155: 10454-19892
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID AES60345.2
description Rpp4C3 [Medicago truncatula]
swissprot
ID Q8RXN4
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1
trembl
ID G7I5Z8
description Rpp4C3 OS=Medicago truncatula GN=MTR_1g044020 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33278: 11119-11766 , PASA_asmbl_33279: 11847-13927 , PASA_asmbl_33280: 16547-20048 , PASA_asmbl_33281: 17105-20106 , PASA_asmbl_33282: 18658-18850
cDNA
(Sanger)
(ID:Location)		 005_E14.ab1: 17105-20106 , 019_D08.ab1: 17105-20106 , 049_K15.ab1: 17131-19980

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003155_020 0.0 - - Rpp4C3 [Medicago truncatula]
2 Hb_009897_010 0.0936614606 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_000123_350 0.1430178388 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
4 Hb_005203_020 0.1437977536 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
5 Hb_001865_060 0.144609844 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
6 Hb_011716_110 0.1450409674 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
7 Hb_001907_100 0.1485428922 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
8 Hb_012725_040 0.1510973734 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_004108_170 0.1523732736 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001369_770 0.1535611138 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
11 Hb_185513_010 0.1537812733 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009897_020 0.1547137952 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_065500_030 0.1556107272 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
14 Hb_012226_010 0.1557826991 - - PREDICTED: protein DGCR14 [Jatropha curcas]
15 Hb_002760_040 0.1563410899 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
16 Hb_021576_140 0.1568558744 - - PREDICTED: protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like [Jatropha curcas]
17 Hb_117895_010 0.156982955 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
18 Hb_003125_030 0.159462295 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_104265_030 0.1616304169 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
20 Hb_000979_240 0.1617539268 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]

Gene co-expression network

sample Hb_003155_020 Hb_003155_020 Hb_009897_010 Hb_009897_010 Hb_003155_020--Hb_009897_010 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_005203_020 Hb_005203_020 Hb_003155_020--Hb_005203_020 Hb_001865_060 Hb_001865_060 Hb_003155_020--Hb_001865_060 Hb_011716_110 Hb_011716_110 Hb_003155_020--Hb_011716_110 Hb_001907_100 Hb_001907_100 Hb_003155_020--Hb_001907_100 Hb_065500_030 Hb_065500_030 Hb_009897_010--Hb_065500_030 Hb_004162_120 Hb_004162_120 Hb_009897_010--Hb_004162_120 Hb_089100_040 Hb_089100_040 Hb_009897_010--Hb_089100_040 Hb_009897_010--Hb_011716_110 Hb_000751_140 Hb_000751_140 Hb_009897_010--Hb_000751_140 Hb_000896_060 Hb_000896_060 Hb_000123_350--Hb_000896_060 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_014834_060 Hb_014834_060 Hb_000123_350--Hb_014834_060 Hb_000526_060 Hb_000526_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010 Hb_001369_770 Hb_001369_770 Hb_005203_020--Hb_001369_770 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_001141_360 Hb_001141_360 Hb_001865_060--Hb_001141_360 Hb_001865_060--Hb_012725_040 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_011716_110--Hb_004162_120 Hb_011716_110--Hb_065500_030 Hb_001544_080 Hb_001544_080 Hb_011716_110--Hb_001544_080 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_080451_010 Hb_080451_010 Hb_011716_110--Hb_080451_010 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_181975_010 Hb_181975_010 Hb_001907_100--Hb_181975_010 Hb_007257_050 Hb_007257_050 Hb_001907_100--Hb_007257_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64723 8.39525 0.66338 2.33284 1.42453 2.98416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.528692 0.500826 0.770379 1.79982 0.876197

CAGE analysis