Hb_134894_010

Information

Type -
Description -
Location Contig134894: 2579-4138
Sequence    

Annotation

kegg
ID tcc:TCM_030368
description E3 ubiquitin-protein ligase UPL5
nr
ID XP_012448558.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A0D2UH00
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G186800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134894_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
2 Hb_006586_030 0.1852644984 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
3 Hb_001524_090 0.1906748432 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
4 Hb_027445_050 0.1960656412 - - PREDICTED: titin isoform X13 [Jatropha curcas]
5 Hb_001989_020 0.2039575091 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
6 Hb_000283_150 0.2151778424 - - Ankyrin repeat family protein [Theobroma cacao]
7 Hb_009848_040 0.2163367633 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
8 Hb_002827_020 0.2211046424 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
9 Hb_001104_240 0.2219831157 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_004724_120 0.2238892312 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
11 Hb_001636_020 0.225942313 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
12 Hb_009848_030 0.2267348693 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
13 Hb_007846_040 0.2299231896 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
14 Hb_007785_010 0.2345396867 - - glutathione peroxidase, putative [Ricinus communis]
15 Hb_000453_150 0.2359296458 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_054885_020 0.2364475313 - - -
17 Hb_002273_060 0.2365845922 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000140_410 0.2369184094 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
19 Hb_002477_220 0.2372173241 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
20 Hb_000061_380 0.2391268872 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_134894_010 Hb_134894_010 Hb_006586_030 Hb_006586_030 Hb_134894_010--Hb_006586_030 Hb_001524_090 Hb_001524_090 Hb_134894_010--Hb_001524_090 Hb_027445_050 Hb_027445_050 Hb_134894_010--Hb_027445_050 Hb_001989_020 Hb_001989_020 Hb_134894_010--Hb_001989_020 Hb_000283_150 Hb_000283_150 Hb_134894_010--Hb_000283_150 Hb_009848_040 Hb_009848_040 Hb_134894_010--Hb_009848_040 Hb_001104_240 Hb_001104_240 Hb_006586_030--Hb_001104_240 Hb_002827_020 Hb_002827_020 Hb_006586_030--Hb_002827_020 Hb_006586_030--Hb_001524_090 Hb_000086_660 Hb_000086_660 Hb_006586_030--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_006586_030--Hb_001269_690 Hb_000200_280 Hb_000200_280 Hb_006586_030--Hb_000200_280 Hb_001524_090--Hb_002827_020 Hb_001524_090--Hb_001104_240 Hb_000733_210 Hb_000733_210 Hb_001524_090--Hb_000733_210 Hb_001524_090--Hb_027445_050 Hb_027445_050--Hb_001269_690 Hb_027445_050--Hb_006586_030 Hb_000140_410 Hb_000140_410 Hb_027445_050--Hb_000140_410 Hb_027445_050--Hb_000733_210 Hb_003157_010 Hb_003157_010 Hb_001989_020--Hb_003157_010 Hb_000032_310 Hb_000032_310 Hb_001989_020--Hb_000032_310 Hb_000649_010 Hb_000649_010 Hb_001989_020--Hb_000649_010 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001396_260 Hb_001396_260 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_000283_150--Hb_002827_020 Hb_000521_170 Hb_000521_170 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_020178_060 Hb_020178_060 Hb_000283_150--Hb_020178_060 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_084429_010 Hb_084429_010 Hb_009848_040--Hb_084429_010 Hb_009848_030 Hb_009848_030 Hb_009848_040--Hb_009848_030 Hb_004096_080 Hb_004096_080 Hb_009848_040--Hb_004096_080 Hb_002235_140 Hb_002235_140 Hb_009848_040--Hb_002235_140 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07162 3.14066 0.660713 0.865862 0.968463 3.2663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.626939 0.399289 0.486126 5.9502 0.0492161

CAGE analysis