Hb_001524_090

Information

Type -
Description -
Location Contig1524: 177190-178383
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08040g
description POPTRDRAFT_818294; senescence-associated family protein
nr
ID XP_011008600.1
description PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H557
description Senescence-associated family protein OS=Populus trichocarpa GN=POPTR_0005s08040g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13100: 177284-178334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001524_090 0.0 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
2 Hb_006586_030 0.1308260247 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
3 Hb_002827_020 0.1649165456 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
4 Hb_001104_240 0.1755292055 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
5 Hb_000733_210 0.1841440598 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
6 Hb_027445_050 0.1873516873 - - PREDICTED: titin isoform X13 [Jatropha curcas]
7 Hb_134894_010 0.1906748432 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
8 Hb_011716_090 0.1933806534 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
9 Hb_004462_010 0.1953303468 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
10 Hb_000200_280 0.1993807214 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
11 Hb_001269_690 0.2017174799 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002972_020 0.2040189893 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
13 Hb_001636_020 0.2052743473 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
14 Hb_001427_070 0.2085227239 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
15 Hb_089140_030 0.2121973589 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
16 Hb_002007_240 0.2126097405 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
17 Hb_002407_080 0.2135067 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
18 Hb_000209_110 0.2188567594 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
19 Hb_002666_020 0.2190891718 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
20 Hb_001989_020 0.2221279288 - - hypothetical protein JCGZ_15521 [Jatropha curcas]

Gene co-expression network

sample Hb_001524_090 Hb_001524_090 Hb_006586_030 Hb_006586_030 Hb_001524_090--Hb_006586_030 Hb_002827_020 Hb_002827_020 Hb_001524_090--Hb_002827_020 Hb_001104_240 Hb_001104_240 Hb_001524_090--Hb_001104_240 Hb_000733_210 Hb_000733_210 Hb_001524_090--Hb_000733_210 Hb_027445_050 Hb_027445_050 Hb_001524_090--Hb_027445_050 Hb_134894_010 Hb_134894_010 Hb_001524_090--Hb_134894_010 Hb_006586_030--Hb_001104_240 Hb_006586_030--Hb_002827_020 Hb_000086_660 Hb_000086_660 Hb_006586_030--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_006586_030--Hb_001269_690 Hb_000200_280 Hb_000200_280 Hb_006586_030--Hb_000200_280 Hb_002827_020--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_002827_020--Hb_011716_090 Hb_000640_130 Hb_000640_130 Hb_002827_020--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150 Hb_001104_240--Hb_000086_660 Hb_001104_240--Hb_001269_690 Hb_001104_240--Hb_002827_020 Hb_001529_050 Hb_001529_050 Hb_001104_240--Hb_001529_050 Hb_001104_240--Hb_000200_280 Hb_134469_010 Hb_134469_010 Hb_000733_210--Hb_134469_010 Hb_007590_070 Hb_007590_070 Hb_000733_210--Hb_007590_070 Hb_002666_020 Hb_002666_020 Hb_000733_210--Hb_002666_020 Hb_002007_240 Hb_002007_240 Hb_000733_210--Hb_002007_240 Hb_001427_070 Hb_001427_070 Hb_000733_210--Hb_001427_070 Hb_001636_020 Hb_001636_020 Hb_000733_210--Hb_001636_020 Hb_027445_050--Hb_001269_690 Hb_027445_050--Hb_006586_030 Hb_027445_050--Hb_134894_010 Hb_000140_410 Hb_000140_410 Hb_027445_050--Hb_000140_410 Hb_027445_050--Hb_000733_210 Hb_134894_010--Hb_006586_030 Hb_001989_020 Hb_001989_020 Hb_134894_010--Hb_001989_020 Hb_134894_010--Hb_000283_150 Hb_009848_040 Hb_009848_040 Hb_134894_010--Hb_009848_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0993 54.7979 2.68352 19.3878 34.1826 59.7988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6942 5.76855 26.6716 129.991 1.76439

CAGE analysis