Hb_004883_060

Information

Type -
Description -
Location Contig4883: 48143-51699
Sequence    

Annotation

kegg
ID rcu:RCOM_1437310
description hypothetical protein
nr
ID XP_012088775.1
description PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23138 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004883_060 0.0 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
2 Hb_005410_040 0.1765521545 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
3 Hb_003073_210 0.1886100926 - - hypothetical protein CISIN_1g036722mg, partial [Citrus sinensis]
4 Hb_171789_010 0.1979669647 - - phosphoenolpyruvate carboxylase [Glycine max]
5 Hb_139859_010 0.201271199 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
6 Hb_000861_030 0.2060391856 - - -
7 Hb_000139_240 0.2127516746 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
8 Hb_022400_010 0.2155351515 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
9 Hb_000209_020 0.21662416 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
10 Hb_157846_010 0.2173770922 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
11 Hb_000252_250 0.21880028 - - unknown [Lotus japonicus]
12 Hb_000009_620 0.2196792154 - - zinc finger protein, putative [Ricinus communis]
13 Hb_039253_010 0.2204926343 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
14 Hb_000995_050 0.2206446573 - - 40S ribosomal protein S17C [Hevea brasiliensis]
15 Hb_003299_090 0.2207484438 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
16 Hb_000270_020 0.2218075781 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
17 Hb_007694_050 0.2238370546 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_001952_070 0.2248260498 - - 40S ribosomal protein S6B [Hevea brasiliensis]
19 Hb_000203_180 0.225962801 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
20 Hb_005916_030 0.2261499943 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]

Gene co-expression network

sample Hb_004883_060 Hb_004883_060 Hb_005410_040 Hb_005410_040 Hb_004883_060--Hb_005410_040 Hb_003073_210 Hb_003073_210 Hb_004883_060--Hb_003073_210 Hb_171789_010 Hb_171789_010 Hb_004883_060--Hb_171789_010 Hb_139859_010 Hb_139859_010 Hb_004883_060--Hb_139859_010 Hb_000861_030 Hb_000861_030 Hb_004883_060--Hb_000861_030 Hb_000139_240 Hb_000139_240 Hb_004883_060--Hb_000139_240 Hb_000705_220 Hb_000705_220 Hb_005410_040--Hb_000705_220 Hb_005215_080 Hb_005215_080 Hb_005410_040--Hb_005215_080 Hb_020902_010 Hb_020902_010 Hb_005410_040--Hb_020902_010 Hb_155375_010 Hb_155375_010 Hb_005410_040--Hb_155375_010 Hb_000510_090 Hb_000510_090 Hb_005410_040--Hb_000510_090 Hb_000442_160 Hb_000442_160 Hb_005410_040--Hb_000442_160 Hb_000270_020 Hb_000270_020 Hb_003073_210--Hb_000270_020 Hb_001771_130 Hb_001771_130 Hb_003073_210--Hb_001771_130 Hb_000041_220 Hb_000041_220 Hb_003073_210--Hb_000041_220 Hb_003299_090 Hb_003299_090 Hb_003073_210--Hb_003299_090 Hb_001584_170 Hb_001584_170 Hb_003073_210--Hb_001584_170 Hb_005839_120 Hb_005839_120 Hb_003073_210--Hb_005839_120 Hb_000136_060 Hb_000136_060 Hb_171789_010--Hb_000136_060 Hb_022400_010 Hb_022400_010 Hb_171789_010--Hb_022400_010 Hb_006642_040 Hb_006642_040 Hb_171789_010--Hb_006642_040 Hb_002805_070 Hb_002805_070 Hb_171789_010--Hb_002805_070 Hb_001840_070 Hb_001840_070 Hb_171789_010--Hb_001840_070 Hb_039253_010 Hb_039253_010 Hb_171789_010--Hb_039253_010 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_139859_010--Hb_003299_090 Hb_005914_090 Hb_005914_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_139859_010--Hb_000270_020 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080 Hb_000953_060 Hb_000953_060 Hb_000861_030--Hb_000953_060 Hb_000861_030--Hb_005410_040 Hb_000891_040 Hb_000891_040 Hb_000861_030--Hb_000891_040 Hb_056506_050 Hb_056506_050 Hb_000861_030--Hb_056506_050 Hb_004342_030 Hb_004342_030 Hb_000861_030--Hb_004342_030 Hb_000209_020 Hb_000209_020 Hb_000139_240--Hb_000209_020 Hb_005324_010 Hb_005324_010 Hb_000139_240--Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_000139_240--Hb_005306_130 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_004734_060 Hb_004734_060 Hb_000139_240--Hb_004734_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.692057 0.540986 0.124623 0.123104 0.306152 2.05452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.425937 0.379792 0.547311 1.1313 0

CAGE analysis