Hb_056506_050

Information

Type -
Description -
Location Contig56506: 28474-36885
Sequence    

Annotation

kegg
ID rcu:RCOM_1430330
description sodium/hydrogen exchanger, putative
nr
ID KJB45175.1
description hypothetical protein B456_007G294000 [Gossypium raimondii]
swissprot
ID Q84WG1
description Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2
trembl
ID A0A0D2TNN1
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G294000 PE=4 SV=1
Gene Ontology
ID GO:0016020
description sodium hydrogen exchanger 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48993: 32759-34142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_050 0.0 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
2 Hb_000861_030 0.1779722121 - - -
3 Hb_056199_010 0.240267532 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
4 Hb_000705_220 0.2448324413 - - unnamed protein product [Vitis vinifera]
5 Hb_005410_040 0.2462678357 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
6 Hb_000295_100 0.2485985819 - - -
7 Hb_000891_040 0.2567035747 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
8 Hb_000001_040 0.2661577457 - - unnamed protein product [Coffea canephora]
9 Hb_002960_050 0.2663116791 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
10 Hb_144898_010 0.2674125732 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_000953_060 0.2680762901 - - PREDICTED: putative phytosulfokines 6 [Vitis vinifera]
12 Hb_121236_010 0.2694251627 - - geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_115919_010 0.2701716394 - - unknown [Lotus japonicus]
14 Hb_012807_080 0.2738440638 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
15 Hb_000808_240 0.2756089998 - - -
16 Hb_047091_010 0.2762724804 - - GABA-specific permease, putative [Ricinus communis]
17 Hb_000062_420 0.2774259032 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009543_030 0.2785568915 - - prefoldin subunit 1 [Jatropha curcas]
19 Hb_004342_030 0.2797612557 - - phosphofructokinase [Hevea brasiliensis]
20 Hb_002197_030 0.2798562586 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_056506_050 Hb_056506_050 Hb_000861_030 Hb_000861_030 Hb_056506_050--Hb_000861_030 Hb_056199_010 Hb_056199_010 Hb_056506_050--Hb_056199_010 Hb_000705_220 Hb_000705_220 Hb_056506_050--Hb_000705_220 Hb_005410_040 Hb_005410_040 Hb_056506_050--Hb_005410_040 Hb_000295_100 Hb_000295_100 Hb_056506_050--Hb_000295_100 Hb_000891_040 Hb_000891_040 Hb_056506_050--Hb_000891_040 Hb_000953_060 Hb_000953_060 Hb_000861_030--Hb_000953_060 Hb_000861_030--Hb_005410_040 Hb_000861_030--Hb_000891_040 Hb_004883_060 Hb_004883_060 Hb_000861_030--Hb_004883_060 Hb_004342_030 Hb_004342_030 Hb_000861_030--Hb_004342_030 Hb_000001_040 Hb_000001_040 Hb_056199_010--Hb_000001_040 Hb_005054_070 Hb_005054_070 Hb_056199_010--Hb_005054_070 Hb_000176_120 Hb_000176_120 Hb_056199_010--Hb_000176_120 Hb_007012_020 Hb_007012_020 Hb_056199_010--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_056199_010--Hb_136731_010 Hb_005367_010 Hb_005367_010 Hb_056199_010--Hb_005367_010 Hb_001976_050 Hb_001976_050 Hb_000705_220--Hb_001976_050 Hb_020902_010 Hb_020902_010 Hb_000705_220--Hb_020902_010 Hb_000705_220--Hb_005410_040 Hb_155375_010 Hb_155375_010 Hb_000705_220--Hb_155375_010 Hb_005735_030 Hb_005735_030 Hb_000705_220--Hb_005735_030 Hb_000032_540 Hb_000032_540 Hb_000705_220--Hb_000032_540 Hb_005215_080 Hb_005215_080 Hb_005410_040--Hb_005215_080 Hb_005410_040--Hb_020902_010 Hb_005410_040--Hb_155375_010 Hb_000510_090 Hb_000510_090 Hb_005410_040--Hb_000510_090 Hb_000442_160 Hb_000442_160 Hb_005410_040--Hb_000442_160 Hb_006455_110 Hb_006455_110 Hb_000295_100--Hb_006455_110 Hb_006455_080 Hb_006455_080 Hb_000295_100--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_012807_080 Hb_012807_080 Hb_000295_100--Hb_012807_080 Hb_005965_010 Hb_005965_010 Hb_000295_100--Hb_005965_010 Hb_006637_060 Hb_006637_060 Hb_000891_040--Hb_006637_060 Hb_007632_250 Hb_007632_250 Hb_000891_040--Hb_007632_250 Hb_119583_010 Hb_119583_010 Hb_000891_040--Hb_119583_010 Hb_000891_040--Hb_000510_090 Hb_000442_100 Hb_000442_100 Hb_000891_040--Hb_000442_100 Hb_181320_010 Hb_181320_010 Hb_000891_040--Hb_181320_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222967 0 0 0.0731378 0.104804 0.645924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0498077 0.235044 0.0721707 0.20473 0

CAGE analysis