Hb_171789_010

Information

Type -
Description -
Location Contig171789: 3944-4594
Sequence    

Annotation

kegg
ID egr:104448531
description phosphoenolpyruvate carboxylase, housekeeping isozyme
nr
ID BAA25129.1
description phosphoenolpyruvate carboxylase [Glycine max]
swissprot
ID Q02909
description Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1
trembl
ID Q76N70
description Phosphoenolpyruvate carboxylase (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005737
description phosphoenolpyruvate carboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171789_010 0.0 - - phosphoenolpyruvate carboxylase [Glycine max]
2 Hb_000136_060 0.1235291936 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
3 Hb_022400_010 0.1478971767 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
4 Hb_006642_040 0.1483565646 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
5 Hb_002805_070 0.1486715738 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
6 Hb_001840_070 0.1501584088 - - DNA binding protein, putative [Ricinus communis]
7 Hb_039253_010 0.1512006019 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
8 Hb_000271_090 0.1524039035 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001922_120 0.1530041685 - - hypothetical protein B456_004G136900 [Gossypium raimondii]
10 Hb_000470_080 0.1597903054 - - Caldesmon, putative [Ricinus communis]
11 Hb_000136_040 0.1605122204 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
12 Hb_075964_010 0.1605890537 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
13 Hb_006157_020 0.1613941661 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
14 Hb_011928_020 0.1629196795 - - something about silencing protein sas10, putative [Ricinus communis]
15 Hb_000071_180 0.1638094352 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
16 Hb_146109_010 0.164519491 - - conserved hypothetical protein [Ricinus communis]
17 Hb_025012_010 0.1650675017 - - PREDICTED: importin-4 [Vitis vinifera]
18 Hb_002028_170 0.166687964 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
19 Hb_000015_060 0.1669307948 - - PREDICTED: uncharacterized protein LOC104239844 isoform X2 [Nicotiana sylvestris]
20 Hb_002027_270 0.1676651677 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_171789_010 Hb_171789_010 Hb_000136_060 Hb_000136_060 Hb_171789_010--Hb_000136_060 Hb_022400_010 Hb_022400_010 Hb_171789_010--Hb_022400_010 Hb_006642_040 Hb_006642_040 Hb_171789_010--Hb_006642_040 Hb_002805_070 Hb_002805_070 Hb_171789_010--Hb_002805_070 Hb_001840_070 Hb_001840_070 Hb_171789_010--Hb_001840_070 Hb_039253_010 Hb_039253_010 Hb_171789_010--Hb_039253_010 Hb_000158_100 Hb_000158_100 Hb_000136_060--Hb_000158_100 Hb_002028_170 Hb_002028_170 Hb_000136_060--Hb_002028_170 Hb_003623_030 Hb_003623_030 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000743_050 Hb_000743_050 Hb_000136_060--Hb_000743_050 Hb_001900_110 Hb_001900_110 Hb_000136_060--Hb_001900_110 Hb_146109_010 Hb_146109_010 Hb_022400_010--Hb_146109_010 Hb_004602_040 Hb_004602_040 Hb_022400_010--Hb_004602_040 Hb_022400_010--Hb_001900_110 Hb_000592_090 Hb_000592_090 Hb_022400_010--Hb_000592_090 Hb_022400_010--Hb_000136_060 Hb_000740_110 Hb_000740_110 Hb_022400_010--Hb_000740_110 Hb_000497_110 Hb_000497_110 Hb_006642_040--Hb_000497_110 Hb_007943_130 Hb_007943_130 Hb_006642_040--Hb_007943_130 Hb_015175_020 Hb_015175_020 Hb_006642_040--Hb_015175_020 Hb_011671_180 Hb_011671_180 Hb_006642_040--Hb_011671_180 Hb_001009_170 Hb_001009_170 Hb_006642_040--Hb_001009_170 Hb_023001_060 Hb_023001_060 Hb_006642_040--Hb_023001_060 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_002805_070--Hb_039253_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_001102_150 Hb_001102_150 Hb_002805_070--Hb_001102_150 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_001840_070--Hb_039253_010 Hb_001840_070--Hb_001102_150 Hb_001840_070--Hb_002805_070 Hb_000271_090 Hb_000271_090 Hb_001840_070--Hb_000271_090 Hb_001840_070--Hb_006642_040 Hb_000038_080 Hb_000038_080 Hb_001840_070--Hb_000038_080 Hb_002023_020 Hb_002023_020 Hb_039253_010--Hb_002023_020 Hb_000364_150 Hb_000364_150 Hb_039253_010--Hb_000364_150 Hb_003656_140 Hb_003656_140 Hb_039253_010--Hb_003656_140 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12233 5.58927 2.50153 2.62825 6.15342 22.2427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.4742 5.13112 8.42202 14.2133 3.87216

CAGE analysis