Hb_146109_010

Information

Type -
Description -
Location Contig146109: 1167-3943
Sequence    

Annotation

kegg
ID rcu:RCOM_1771670
description hypothetical protein
nr
ID XP_002512158.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q08A72
description Protein EMSY-LIKE 4 OS=Arabidopsis thaliana GN=EML4 PE=2 SV=1
trembl
ID B9REI9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1771670 PE=4 SV=1
Gene Ontology
ID GO:0003677
description emsy n terminus domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146109_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_022400_010 0.084077498 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
3 Hb_004602_040 0.0864353911 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
4 Hb_013399_070 0.0959489953 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
5 Hb_031284_040 0.1026142247 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
6 Hb_004117_310 0.1033119547 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
7 Hb_000236_310 0.103630174 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
8 Hb_009476_040 0.1046458708 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000457_260 0.1065918232 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_005228_130 0.1085268597 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000023_330 0.1090536481 - - RNA recognition motif-containing family protein [Populus trichocarpa]
12 Hb_004954_070 0.1095123987 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
13 Hb_000856_310 0.1097018305 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
14 Hb_027472_050 0.1108626401 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
15 Hb_000181_320 0.1109475366 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
16 Hb_000521_270 0.1116465265 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
17 Hb_000173_490 0.1127731858 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
18 Hb_002255_030 0.1132055587 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
19 Hb_000084_120 0.1132963586 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
20 Hb_000271_090 0.1147482342 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_146109_010 Hb_146109_010 Hb_022400_010 Hb_022400_010 Hb_146109_010--Hb_022400_010 Hb_004602_040 Hb_004602_040 Hb_146109_010--Hb_004602_040 Hb_013399_070 Hb_013399_070 Hb_146109_010--Hb_013399_070 Hb_031284_040 Hb_031284_040 Hb_146109_010--Hb_031284_040 Hb_004117_310 Hb_004117_310 Hb_146109_010--Hb_004117_310 Hb_000236_310 Hb_000236_310 Hb_146109_010--Hb_000236_310 Hb_022400_010--Hb_004602_040 Hb_001900_110 Hb_001900_110 Hb_022400_010--Hb_001900_110 Hb_000592_090 Hb_000592_090 Hb_022400_010--Hb_000592_090 Hb_000136_060 Hb_000136_060 Hb_022400_010--Hb_000136_060 Hb_000740_110 Hb_000740_110 Hb_022400_010--Hb_000740_110 Hb_001912_100 Hb_001912_100 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000244_220 Hb_000244_220 Hb_004602_040--Hb_000244_220 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_000170_150 Hb_000170_150 Hb_013399_070--Hb_000170_150 Hb_003768_050 Hb_003768_050 Hb_013399_070--Hb_003768_050 Hb_001946_340 Hb_001946_340 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_001821_090 Hb_001821_090 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230 Hb_000083_160 Hb_000083_160 Hb_031284_040--Hb_000083_160 Hb_000173_490 Hb_000173_490 Hb_031284_040--Hb_000173_490 Hb_007575_050 Hb_007575_050 Hb_031284_040--Hb_007575_050 Hb_004935_030 Hb_004935_030 Hb_031284_040--Hb_004935_030 Hb_000271_090 Hb_000271_090 Hb_031284_040--Hb_000271_090 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020 Hb_000343_120 Hb_000343_120 Hb_004117_310--Hb_000343_120 Hb_000890_210 Hb_000890_210 Hb_004117_310--Hb_000890_210 Hb_010174_110 Hb_010174_110 Hb_004117_310--Hb_010174_110 Hb_001341_170 Hb_001341_170 Hb_004117_310--Hb_001341_170 Hb_000107_490 Hb_000107_490 Hb_004117_310--Hb_000107_490 Hb_002740_110 Hb_002740_110 Hb_004117_310--Hb_002740_110 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_002600_140 Hb_002600_140 Hb_000236_310--Hb_002600_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3776 41.9989 9.85888 18.0629 21.1216 61.9153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8937 25.6666 23.1022 42.0928 25.7504

CAGE analysis