Hb_000497_010

Information

Type transcription factor
Description TF Family: SET
Location Contig497: 11349-12401
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12600g
description POPTRDRAFT_797229; hypothetical protein
nr
ID XP_012088668.1
description PREDICTED: histone-lysine N-methyltransferase ASHR2 [Jatropha curcas]
swissprot
ID Q9ZUM9
description Histone-lysine N-methyltransferase ASHR2 OS=Arabidopsis thaliana GN=ASHR2 PE=2 SV=3
trembl
ID A0A067JHC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23060 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase ashr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45509: 11247-12694
cDNA
(Sanger)
(ID:Location)		 041_M13.ab1: 11247-12008

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_010 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR2 [Jatropha curcas]
2 Hb_011671_230 0.1294401397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000768_180 0.1299911109 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
4 Hb_005260_040 0.1311361963 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
5 Hb_012184_060 0.1318393633 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
6 Hb_155159_010 0.1409440666 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
7 Hb_001369_770 0.1421851212 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
8 Hb_004371_010 0.143703071 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
9 Hb_003106_030 0.1461937148 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
10 Hb_004310_040 0.1486330897 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002282_060 0.1498952633 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_002784_010 0.1509890434 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
13 Hb_005725_170 0.1518071485 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
14 Hb_003581_250 0.1524371641 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
15 Hb_000264_080 0.1525396192 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
16 Hb_005214_150 0.1531355055 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
17 Hb_011920_020 0.1532449576 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
18 Hb_005104_010 0.1536485661 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
19 Hb_054885_020 0.1546872008 - - -
20 Hb_063480_020 0.1553551488 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000497_010 Hb_000497_010 Hb_011671_230 Hb_011671_230 Hb_000497_010--Hb_011671_230 Hb_000768_180 Hb_000768_180 Hb_000497_010--Hb_000768_180 Hb_005260_040 Hb_005260_040 Hb_000497_010--Hb_005260_040 Hb_012184_060 Hb_012184_060 Hb_000497_010--Hb_012184_060 Hb_155159_010 Hb_155159_010 Hb_000497_010--Hb_155159_010 Hb_001369_770 Hb_001369_770 Hb_000497_010--Hb_001369_770 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_002784_010 Hb_002784_010 Hb_011671_230--Hb_002784_010 Hb_000574_510 Hb_000574_510 Hb_011671_230--Hb_000574_510 Hb_005260_010 Hb_005260_010 Hb_000768_180--Hb_005260_010 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000236_220 Hb_000236_220 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_000836_020 Hb_000836_020 Hb_012184_060--Hb_000836_020 Hb_003177_060 Hb_003177_060 Hb_012184_060--Hb_003177_060 Hb_009476_090 Hb_009476_090 Hb_012184_060--Hb_009476_090 Hb_001699_280 Hb_001699_280 Hb_012184_060--Hb_001699_280 Hb_012184_060--Hb_002784_010 Hb_188063_010 Hb_188063_010 Hb_012184_060--Hb_188063_010 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020 Hb_002942_110 Hb_002942_110 Hb_001369_770--Hb_002942_110 Hb_000538_190 Hb_000538_190 Hb_001369_770--Hb_000538_190 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_020178_050 Hb_020178_050 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1156 45.6915 18.846 9.88566 15.8997 36.3949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56367 10.3571 4.00481 25.8464 11.5149

CAGE analysis