Hb_012184_060

Information

Type -
Description -
Location Contig12184: 84744-93480
Sequence    

Annotation

kegg
ID rcu:RCOM_0942390
description hypothetical protein
nr
ID XP_012081944.1
description PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
swissprot
ID Q9CAF4
description Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana GN=NUP1 PE=1 SV=1
trembl
ID A0A067KB49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06634: 84790-93482 , PASA_asmbl_06635: 92770-93091 , PASA_asmbl_06636: 91807-91949 , PASA_asmbl_06637: 88094-88304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012184_060 0.0 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
2 Hb_000836_020 0.0765160009 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
3 Hb_003177_060 0.0774581779 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
4 Hb_009476_090 0.0777397765 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
5 Hb_001699_280 0.0794564321 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
6 Hb_002784_010 0.0797759237 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
7 Hb_188063_010 0.0798478777 - - hypothetical protein RCOM_1469330 [Ricinus communis]
8 Hb_000025_710 0.0824760899 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
9 Hb_003581_170 0.0828178758 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
10 Hb_005832_010 0.0836747064 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
11 Hb_001662_180 0.0841082545 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
12 Hb_143489_020 0.0885348391 - - -
13 Hb_000069_410 0.0888872207 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
14 Hb_002097_050 0.0893399068 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
15 Hb_001821_090 0.0915081746 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
16 Hb_004223_160 0.0918048725 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
17 Hb_011671_230 0.0918566691 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000105_040 0.0929105131 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
19 Hb_000768_180 0.0931650559 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
20 Hb_028487_010 0.0933396146 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012184_060 Hb_012184_060 Hb_000836_020 Hb_000836_020 Hb_012184_060--Hb_000836_020 Hb_003177_060 Hb_003177_060 Hb_012184_060--Hb_003177_060 Hb_009476_090 Hb_009476_090 Hb_012184_060--Hb_009476_090 Hb_001699_280 Hb_001699_280 Hb_012184_060--Hb_001699_280 Hb_002784_010 Hb_002784_010 Hb_012184_060--Hb_002784_010 Hb_188063_010 Hb_188063_010 Hb_012184_060--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_000836_020--Hb_188063_010 Hb_003498_120 Hb_003498_120 Hb_003177_060--Hb_003498_120 Hb_007426_130 Hb_007426_130 Hb_003177_060--Hb_007426_130 Hb_001821_090 Hb_001821_090 Hb_003177_060--Hb_001821_090 Hb_000069_410 Hb_000069_410 Hb_003177_060--Hb_000069_410 Hb_000740_100 Hb_000740_100 Hb_003177_060--Hb_000740_100 Hb_000377_050 Hb_000377_050 Hb_009476_090--Hb_000377_050 Hb_005832_010 Hb_005832_010 Hb_009476_090--Hb_005832_010 Hb_009476_090--Hb_000703_130 Hb_004223_160 Hb_004223_160 Hb_009476_090--Hb_004223_160 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_001699_280--Hb_188063_010 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_005214_150 Hb_005214_150 Hb_002784_010--Hb_005214_150 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_188063_010--Hb_000025_710 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_188063_010--Hb_003581_170 Hb_188063_010--Hb_000261_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3799 26.8831 9.2424 10.5697 12.7801 20.775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.78649 7.1354 5.87363 21.9208 15.6318

CAGE analysis