Hb_003929_060

Information

Type -
Description -
Location Contig3929: 57051-58019
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00500g
description hypothetical protein
nr
ID XP_012084206.1
description PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
swissprot
ID P13940
description Late embryogenesis abundant protein D-29 OS=Gossypium hirsutum PE=3 SV=1
trembl
ID B9HXA9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00500g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39349: 56987-58032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_060 0.0 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
2 Hb_000061_040 0.1409777156 - - PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
3 Hb_114261_010 0.1932035333 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
4 Hb_005389_110 0.2311949281 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
5 Hb_000828_040 0.2486076419 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_002235_140 0.2726813054 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000160_200 0.2754220819 - - PREDICTED: uncharacterized protein LOC105648226 [Jatropha curcas]
8 Hb_001396_150 0.2756909728 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
9 Hb_000270_210 0.2771374103 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
10 Hb_000122_140 0.2850534998 - - -
11 Hb_002918_090 0.2904465552 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
12 Hb_000217_060 0.2982067962 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_134894_010 0.2992988847 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
14 Hb_004883_060 0.3001142796 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
15 Hb_000861_030 0.30205892 - - -
16 Hb_000089_150 0.3071699791 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
17 Hb_056506_060 0.30768178 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
18 Hb_002998_050 0.3100189476 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
19 Hb_084858_010 0.3113466642 - - Uncharacterized protein isoform 3 [Theobroma cacao]
20 Hb_002735_040 0.3176531398 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_060 Hb_003929_060 Hb_000061_040 Hb_000061_040 Hb_003929_060--Hb_000061_040 Hb_114261_010 Hb_114261_010 Hb_003929_060--Hb_114261_010 Hb_005389_110 Hb_005389_110 Hb_003929_060--Hb_005389_110 Hb_000828_040 Hb_000828_040 Hb_003929_060--Hb_000828_040 Hb_002235_140 Hb_002235_140 Hb_003929_060--Hb_002235_140 Hb_000160_200 Hb_000160_200 Hb_003929_060--Hb_000160_200 Hb_000061_040--Hb_114261_010 Hb_000061_040--Hb_000160_200 Hb_000061_040--Hb_000828_040 Hb_000861_030 Hb_000861_030 Hb_000061_040--Hb_000861_030 Hb_004883_060 Hb_004883_060 Hb_000061_040--Hb_004883_060 Hb_114261_010--Hb_000160_200 Hb_001023_020 Hb_001023_020 Hb_114261_010--Hb_001023_020 Hb_001396_150 Hb_001396_150 Hb_114261_010--Hb_001396_150 Hb_000270_500 Hb_000270_500 Hb_114261_010--Hb_000270_500 Hb_018344_010 Hb_018344_010 Hb_005389_110--Hb_018344_010 Hb_000270_210 Hb_000270_210 Hb_005389_110--Hb_000270_210 Hb_000402_010 Hb_000402_010 Hb_005389_110--Hb_000402_010 Hb_002735_040 Hb_002735_040 Hb_005389_110--Hb_002735_040 Hb_000640_150 Hb_000640_150 Hb_005389_110--Hb_000640_150 Hb_000009_620 Hb_000009_620 Hb_000828_040--Hb_000009_620 Hb_001507_100 Hb_001507_100 Hb_000828_040--Hb_001507_100 Hb_000640_300 Hb_000640_300 Hb_000828_040--Hb_000640_300 Hb_003160_020 Hb_003160_020 Hb_000828_040--Hb_003160_020 Hb_028872_060 Hb_028872_060 Hb_000828_040--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000828_040--Hb_001150_040 Hb_002918_090 Hb_002918_090 Hb_002235_140--Hb_002918_090 Hb_009848_040 Hb_009848_040 Hb_002235_140--Hb_009848_040 Hb_002235_140--Hb_001396_150 Hb_009848_030 Hb_009848_030 Hb_002235_140--Hb_009848_030 Hb_000375_370 Hb_000375_370 Hb_002235_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_002235_140--Hb_031089_030 Hb_000160_200--Hb_000270_500 Hb_002243_040 Hb_002243_040 Hb_000160_200--Hb_002243_040 Hb_116681_010 Hb_116681_010 Hb_000160_200--Hb_116681_010 Hb_004032_080 Hb_004032_080 Hb_000160_200--Hb_004032_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.369397 0.0857021 0 0.0259939 0.0284329 0.406069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651105 0.0511981 0 0.289856 0

CAGE analysis