Hb_036693_010

Information

Type -
Description -
Location Contig36693: 6-167
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036693_010 0.0 - - -
2 Hb_005155_020 0.1710394853 - - -
3 Hb_005517_010 0.177650786 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
4 Hb_000169_190 0.2008829913 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
5 Hb_012107_070 0.2015084756 - - -
6 Hb_000099_090 0.2089676336 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
7 Hb_012184_050 0.2138772463 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
8 Hb_170532_010 0.2197858063 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
9 Hb_000045_320 0.2218191593 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
10 Hb_055339_010 0.2218697719 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
11 Hb_000160_150 0.2280353181 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
12 Hb_000258_320 0.228212765 - - -
13 Hb_080147_080 0.2301347875 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_004570_050 0.2302840711 - - kinase, putative [Ricinus communis]
15 Hb_001916_060 0.2317031839 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
16 Hb_006230_040 0.232146561 - - kinase, putative [Ricinus communis]
17 Hb_001195_150 0.2332815105 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
18 Hb_027472_210 0.2351374495 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
19 Hb_171619_010 0.2375088143 - - protein binding protein, putative [Ricinus communis]
20 Hb_005464_030 0.2408347334 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_036693_010 Hb_036693_010 Hb_005155_020 Hb_005155_020 Hb_036693_010--Hb_005155_020 Hb_005517_010 Hb_005517_010 Hb_036693_010--Hb_005517_010 Hb_000169_190 Hb_000169_190 Hb_036693_010--Hb_000169_190 Hb_012107_070 Hb_012107_070 Hb_036693_010--Hb_012107_070 Hb_000099_090 Hb_000099_090 Hb_036693_010--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_036693_010--Hb_012184_050 Hb_005155_020--Hb_000169_190 Hb_005155_020--Hb_005517_010 Hb_005155_020--Hb_000099_090 Hb_004570_050 Hb_004570_050 Hb_005155_020--Hb_004570_050 Hb_005155_020--Hb_012184_050 Hb_005517_010--Hb_012107_070 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_061466_020 Hb_061466_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_028848_030 Hb_028848_030 Hb_012107_070--Hb_028848_030 Hb_012107_070--Hb_005155_020 Hb_012107_070--Hb_061466_020 Hb_000214_090 Hb_000214_090 Hb_012107_070--Hb_000214_090 Hb_016006_010 Hb_016006_010 Hb_000099_090--Hb_016006_010 Hb_073973_030 Hb_073973_030 Hb_000099_090--Hb_073973_030 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000099_090--Hb_000169_190 Hb_000890_010 Hb_000890_010 Hb_000099_090--Hb_000890_010 Hb_002805_170 Hb_002805_170 Hb_012184_050--Hb_002805_170 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
620.782 414.973 459.211 75.7081 209.852 373.467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8916 25.1183 0 28.4766 15.9717

CAGE analysis