Hb_016006_010

Information

Type -
Description -
Location Contig16006: 4324-5302
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074440.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0016705
description choline chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016006_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000099_090 0.0802999652 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
3 Hb_073973_030 0.1395853223 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
4 Hb_011932_010 0.1432946693 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
5 Hb_001484_100 0.1481907912 - - PREDICTED: cyanate hydratase [Jatropha curcas]
6 Hb_000589_060 0.1633299594 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
7 Hb_000890_010 0.1646852718 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001621_110 0.1696521141 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
9 Hb_010346_020 0.1696712317 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
10 Hb_000077_120 0.171633367 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
11 Hb_005656_080 0.1722980247 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
12 Hb_005054_310 0.1748950917 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
13 Hb_002890_150 0.1764465717 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
14 Hb_000122_010 0.1772540705 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000836_370 0.1823460213 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
16 Hb_001269_200 0.1826659835 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
17 Hb_000834_240 0.1833640392 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
18 Hb_000179_180 0.1836222007 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
19 Hb_006502_020 0.1837516248 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
20 Hb_000336_110 0.1838702653 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_016006_010 Hb_016006_010 Hb_000099_090 Hb_000099_090 Hb_016006_010--Hb_000099_090 Hb_073973_030 Hb_073973_030 Hb_016006_010--Hb_073973_030 Hb_011932_010 Hb_011932_010 Hb_016006_010--Hb_011932_010 Hb_001484_100 Hb_001484_100 Hb_016006_010--Hb_001484_100 Hb_000589_060 Hb_000589_060 Hb_016006_010--Hb_000589_060 Hb_000890_010 Hb_000890_010 Hb_016006_010--Hb_000890_010 Hb_000099_090--Hb_073973_030 Hb_027472_210 Hb_027472_210 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000169_190 Hb_000169_190 Hb_000099_090--Hb_000169_190 Hb_000099_090--Hb_000890_010 Hb_005656_080 Hb_005656_080 Hb_073973_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_073973_030--Hb_000077_120 Hb_003581_210 Hb_003581_210 Hb_073973_030--Hb_003581_210 Hb_073973_030--Hb_011932_010 Hb_000179_180 Hb_000179_180 Hb_011932_010--Hb_000179_180 Hb_011932_010--Hb_000589_060 Hb_011932_010--Hb_001484_100 Hb_011932_010--Hb_005656_080 Hb_000205_130 Hb_000205_130 Hb_011932_010--Hb_000205_130 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_030545_030 Hb_030545_030 Hb_001484_100--Hb_030545_030 Hb_000589_060--Hb_000179_180 Hb_009393_200 Hb_009393_200 Hb_000589_060--Hb_009393_200 Hb_000122_010 Hb_000122_010 Hb_000589_060--Hb_000122_010 Hb_001486_020 Hb_001486_020 Hb_000589_060--Hb_001486_020 Hb_006132_040 Hb_006132_040 Hb_000890_010--Hb_006132_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_005610_080 Hb_005610_080 Hb_000890_010--Hb_005610_080 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.15834 6.75609 7.76676 3.09528 2.57012 5.07426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.655979 2.06144 0.175108 1.02705 1.15968

CAGE analysis